View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336-Insertion-144 (Length: 97)

Name: NF4336-Insertion-144
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336-Insertion-144
NF4336-Insertion-144
[»] chr5 (3 HSPs)
chr5 (1-97)||(8624802-8624894)
chr5 (35-78)||(33155615-33155658)
chr5 (36-88)||(2818978-2819031)
[»] chr8 (2 HSPs)
chr8 (35-88)||(6863069-6863123)
chr8 (35-78)||(39785623-39785666)
[»] chr1 (1 HSPs)
chr1 (36-88)||(7890409-7890462)
[»] chr3 (2 HSPs)
chr3 (39-88)||(4221665-4221716)
chr3 (10-78)||(22404084-22404152)
[»] chr4 (1 HSPs)
chr4 (35-92)||(8482364-8482422)
[»] chr6 (1 HSPs)
chr6 (48-95)||(2188739-2188787)


Alignment Details
Target: chr5 (Bit Score: 58; Significance: 6e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 6e-25
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 8624894 - 8624802
Alignment:
Q  1 gattctaggtgcacaagtgagacaagtcgtgcatctagttttcacgattggataaataaatctcaccattaaattaaag-aaatatgatatgatttac 97  Q
    |||||||||||||||||||||||||||| ||||||||  |     |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8624894 gattctaggtgcacaagtgagacaagtcttgcatctatat-----gattggataaataaatctcaccattaaattaaagaaaatatgatatgatttac 8624802  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 33155658 - 33155615
Alignment:
Q  35 ctagttttcacgattggataaataaatctcaccattaaattaaa 78  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||    
T  33155658 ctagttttcaccattggatcaataaatcccaccattaaattaaa 33155615  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 2818978 - 2819031
Alignment:
Q  36 tagttttcacgattggataaataaatctcaccattaaattaaa-gaaatatgat 88  Q
    |||||||||  ||||||| ||||||||||||||||| |||||| ||||||||||    
T  2818978 tagttttcatcattggatcaataaatctcaccattagattaaatgaaatatgat 2819031  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 6863069 - 6863123
Alignment:
Q  35 ctagttttcacgattggataaataaatctcaccattaaattaaa-gaaatatgat 88  Q
    ||||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||    
T  6863069 ctagtttccaccattggatcaataaatctcaccattaaattaaatgaaatatgat 6863123  T

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Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 39785623 - 39785666
Alignment:
Q  35 ctagttttcacgattggataaataaatctcaccattaaattaaa 78  Q
    ||||||||||| ||||||| |||||||| ||| |||||||||||    
T  39785623 ctagttttcaccattggatcaataaatcccacaattaaattaaa 39785666  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 7890409 - 7890462
Alignment:
Q  36 tagttttcacgattggataaataaatctcaccattaaattaaa-gaaatatgat 88  Q
    |||||||||| ||||||| ||||||| |||||||||||||||| ||||||||||    
T  7890409 tagttttcactattggatcaataaatttcaccattaaattaaatgaaatatgat 7890462  T

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Target: chr3 (Bit Score: 33; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 4221665 - 4221716
Alignment:
Q  39 ttttcacgattggataaataaatctcaccattaaatt--aaagaaatatgat 88  Q
    ||||||| ||||||| |||||||||||||||||||||  |||||||||||||    
T  4221665 ttttcactattggatcaataaatctcaccattaaattgaaaagaaatatgat 4221716  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 22404084 - 22404152
Alignment:
Q  10 tgcacaagtgagacaagtcgtgcatctagttttcacgattggataaataaatctcaccattaaattaaa 78  Q
    ||||||||||||||||| |  ||||||| ||||||| ||| ||| |||||| | ||| |||||||||||    
T  22404084 tgcacaagtgagacaagccaagcatctaattttcacaatttgatcaataaaccccactattaaattaaa 22404152  T

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Target: chr4 (Bit Score: 31; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 8482364 - 8482422
Alignment:
Q  35 ctagttttcacgattggataaataaatctcaccattaaattaaa-gaaatatgatatga 92  Q
    ||||||||||| ||||| | ||||||| |||||||||||||||| ||||||||| ||||    
T  8482364 ctagttttcaccattggttcaataaatttcaccattaaattaaatgaaatatgacatga 8482422  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 2188739 - 2188787
Alignment:
Q  48 ttggataaataaatctcaccattaaattaaa-gaaatatgatatgattt 95  Q
    |||||| ||||||||| || ||||||||||| |||||||||||||||||    
T  2188739 ttggatcaataaatcttacaattaaattaaatgaaatatgatatgattt 2188787  T

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