View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336-Insertion-16 (Length: 251)

Name: NF4336-Insertion-16
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336-Insertion-16
NF4336-Insertion-16
[»] chr4 (2 HSPs)
chr4 (1-251)||(30518079-30518328)
chr4 (43-163)||(22085524-22085644)
[»] chr2 (4 HSPs)
chr2 (18-182)||(38895856-38896020)
chr2 (19-181)||(42898262-42898424)
chr2 (24-82)||(40040758-40040816)
chr2 (18-67)||(5435530-5435579)
[»] chr1 (8 HSPs)
chr1 (1-181)||(36989286-36989466)
chr1 (1-182)||(4160323-4160504)
chr1 (1-181)||(28496106-28496286)
chr1 (1-181)||(12804511-12804691)
chr1 (43-163)||(31644076-31644196)
chr1 (1-182)||(12774883-12775064)
chr1 (1-182)||(50788818-50788999)
chr1 (19-163)||(42287081-42287225)
[»] chr8 (2 HSPs)
chr8 (12-166)||(33186692-33186846)
chr8 (36-182)||(5788722-5788868)
[»] chr7 (2 HSPs)
chr7 (51-181)||(44150800-44150930)
chr7 (43-182)||(40749378-40749517)
[»] chr5 (1 HSPs)
chr5 (41-125)||(1983162-1983246)
[»] chr3 (3 HSPs)
chr3 (30-76)||(52248460-52248506)
chr3 (77-125)||(12106124-12106172)
chr3 (77-125)||(46987775-46987823)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 30518328 - 30518079
Alignment:
Q  1 caagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518328 caagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgt 30518229  T
Q  101 tcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggtaaactaactgcctatccatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  30518228 tcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggt-aattaactgcctatccatc 30518130  T
Q  201 catctctatgttattctgctcacatcgttgtaatcggtatatatgatataa 251  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30518129 catctctatgttattctgatcacatcgttgtaatcggtatatatgatataa 30518079  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 22085644 - 22085524
Alignment:
Q  43 gtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactag 142  Q
    ||||||| |||||||| ||||||||||||||||| ||||| || ||    ||||| ||||| || ||||||||||||||    || |  ||||| |||||    
T  22085644 gtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactag 22085545  T
Q  143 agaatacaaatgtgactgtgg 163  Q
    ||| ||||||||||| |||||    
T  22085544 agagtacaaatgtgattgtgg 22085524  T

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Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 38896020 - 38895856
Alignment:
Q  18 ttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaag 117  Q
    |||||||||||||| |||||||||||||| || || ||||| ||||||||||||||||||||||||||||||  |||||||||||| || ||||||||||    
T  38896020 ttaactgggataaagaagcacttttgtaggaaacacggtgagaagaagtggaagtgtgagaagtgctcaaaattttatgctgttcaatcggattggaaag 38895921  T
Q  118 ctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggtaa 182  Q
    | |||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  38895920 cacactcaaagacttgtggtactagagaatacaaatgtgattgtggcactatcttttcaaggtaa 38895856  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 42898262 - 42898424
Alignment:
Q  19 taactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagc 118  Q
    ||||||| || || |||||||| || |||||||| ||||| ||||||||||| ||||| |||||||| ||    ||||| ||||| ||||| ||||||||    
T  42898262 taactggtatcaagaagcacttctgcagaaagcacggtgagaagaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagc 42898361  T
Q  119 tcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta 181  Q
    |||||| ||||| ||||| || |||||||||| |||||||||||||||  |||| ||||||||    
T  42898362 tcactccaaaacctgtggcacaagagaatacagatgtgactgtggaaccctcttctcaaggta 42898424  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 40040758 - 40040816
Alignment:
Q  24 gggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtg 82  Q
    |||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |||||    
T  40040758 gggataaaaaagcactttagtagaaagcacggtgagaagaagtggaagtgtgataagtg 40040816  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 5435579 - 5435530
Alignment:
Q  18 ttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtg 67  Q
    ||||| |||||||| |||||||||||||| ||||| ||||| ||||||||    
T  5435579 ttaacagggataaagaagcacttttgtaggaagcacggtgagaagaagtg 5435530  T

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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 36989286 - 36989466
Alignment:
Q  1 caagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgt 100  Q
    |||| |||||||||||  | ||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| ||||| || ||    ||||||||    
T  36989286 caagagcacttggtgatcttactggaattaaaaagcacttttgtagaaagcatggtgagaaaaagtggaaatgtgataagtgttctaagaaatatgctgt 36989385  T
Q  101 tcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta 181  Q
    ||| || |||||||||||||| || |||| ||||||||| || ||||||||||||||||||||||| |||||||| |||||    
T  36989386 tcaatctgattggaaagctcattccaaaatatgtggtacaagggaatacaaatgtgactgtggaaccatcttttccaggta 36989466  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 4160323 - 4160504
Alignment:
Q  1 caagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgt 100  Q
    ||||||||||||||||| ||||||| || || ||||||||||  || ||||| ||||| |||||||||||||||||||| || || ||||| ||||| ||    
T  4160323 caagggcacttggtgacctaactggaatcaagaagcactttttcaggaagcacggtgagaagaagtggaagtgtgagaaatgttctaaacgatatgcagt 4160422  T
Q  101 tcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggtaa 182  Q
    |||||| |||||||||||||| || ||||  ||||| |||| ||| || || ||||||||||||||  |||| |||||||||    
T  4160423 tcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgactgtggaaccctcttctcaaggtaa 4160504  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 28496286 - 28496106
Alignment:
Q  1 caagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgt 100  Q
    |||| |||||||||||| | || || ||||||||||||||| |||||||||| ||||| ||||||||||| ||||| || || || |||   ||||| ||    
T  28496286 caagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagt 28496187  T
Q  101 tcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta 181  Q
     || || ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| ||  |||| ||||||||    
T  28496186 ccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggta 28496106  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 12804691 - 12804511
Alignment:
Q  1 caagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgt 100  Q
    ||||||| ||||||||| | ||||| || || |||||||||| ||||||||||||||| || |||||||| ||||| ||||| || ||    ||||||||    
T  12804691 caagggctcttggtgacctcactggaattaagaagcacttttctagaaagcatggtgagaaaaagtggaaatgtgaaaagtgttctaagaaatatgctgt 12804592  T
Q  101 tcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta 181  Q
    ||| || |||||||||||||| || || || ||||||||||| || || | |||||||||||| ||| |||| ||||||||    
T  12804591 tcaatctgattggaaagctcattctaagacttgtggtactagggagtatagatgtgactgtggcactctcttctcaaggta 12804511  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 31644196 - 31644076
Alignment:
Q  43 gtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactag 142  Q
    ||||||| |||||||| || || ||||| ||||| |||||||||||    ||||||||||| || ||||||||||||||||| ||||| ||||||||| |    
T  31644196 gtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactcg 31644097  T
Q  143 agaatacaaatgtgactgtgg 163  Q
    |||||| |||||||| |||||    
T  31644096 agaatataaatgtgattgtgg 31644076  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 12774883 - 12775064
Alignment:
Q  1 caagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgt 100  Q
    ||||||| ||||||||| | ||||| || || || |||| || ||||||||||||||| || || ||||||||||| ||||| || ||    ||||||||    
T  12774883 caagggctcttggtgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaagtatgctgt 12774982  T
Q  101 tcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggtaa 182  Q
    ||| || |||||||||||||| || ||||| ||||||||||  || || | |||||||||||| ||| |||| || ||||||    
T  12774983 tcaatctgattggaaagctcattctaaaacttgtggtactaaggagtatagatgtgactgtggcactctcttctccaggtaa 12775064  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 50788999 - 50788818
Alignment:
Q  1 caagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgt 100  Q
    ||||||||||||||||| | |||||||| || || ||||  | | | || |||||||| ||||| ||||||||||| |||||||| ||    ||||||||    
T  50788999 caagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgt 50788900  T
Q  101 tcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggtaa 182  Q
    ||| || |||||||| || || || || || ||||| || |||||||| |  ||||||||||| ||| |||| || ||||||    
T  50788899 tcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtgactgtggcactctcttctccaggtaa 50788818  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 42287081 - 42287225
Alignment:
Q  19 taactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagc 118  Q
    ||||||| || |||||||| || | | | ||||| ||||| ||||||||||| ||||| || ||||||||    ||||||||||| || || ||||||||    
T  42287081 taactggaattaaaaagcatttctctcgtaagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagc 42287180  T
Q  119 tcactcaaaaacatgtggtactagagaatacaaatgtgactgtgg 163  Q
     || || || || ||||||||||||||||| | |||||| |||||    
T  42287181 acattctaagacttgtggtactagagaatatagatgtgattgtgg 42287225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 33186692 - 33186846
Alignment:
Q  12 ggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagatt 111  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||| || || ||    ||||||||||| || ||||    
T  33186692 ggtgatttaactgggataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgatt 33186791  T
Q  112 ggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaac 166  Q
    ||||||||||||| |||   |||||| ||||||| || |||||||| ||||||||    
T  33186792 ggaaagctcactctaaagtttgtggttctagagagtataaatgtgattgtggaac 33186846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 5788868 - 5788722
Alignment:
Q  36 cacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtg 135  Q
    |||||||  |||||||||||||| ||||||||||| ||||| ||||| |||||    ||||||||||| || |||||||||||||| || ||||| ||||    
T  5788868 cacttttccagaaagcatggtgagaagaagtggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtg 5788769  T
Q  136 gtactagagaatacaaatgtgactgtggaactatcttttcaaggtaa 182  Q
    | ||||||||||| | |||||||||||||||  |||| |||||||||    
T  5788768 gcactagagaatatagatgtgactgtggaaccctcttctcaaggtaa 5788722  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 44150930 - 44150800
Alignment:
Q  51 catggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaataca 150  Q
    |||||||| ||||| ||||| ||||| |||||||| ||| | ||||||||||| ||||||||||| ||||||   ||||| ||||||||||| |||||||    
T  44150930 catggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactagggaataca 44150831  T
Q  151 aatgtgactgtggaactatcttttcaaggta 181  Q
    ||||||| |||||||| || ||||| |||||    
T  44150830 aatgtgattgtggaaccatattttctaggta 44150800  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 40749378 - 40749517
Alignment:
Q  43 gtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactag 142  Q
    ||||||| ||||| || ||||| ||||||||||| ||||| || ||    ||||| || || || ||||||||||||||| | ||||| |||||||||||    
T  40749378 gtagaaaacatggcgagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattggaaagctcacactaaaacttgtggtactag 40749477  T
Q  143 agaatacaaatgtgactgtggaactatcttttcaaggtaa 182  Q
    |||||| || ||||| ||||| ||  |||| |||||||||    
T  40749478 agaatataagtgtgattgtggtacactcttctcaaggtaa 40749517  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 1983162 - 1983246
Alignment:
Q  41 ttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactca 125  Q
    |||||| |||||  |||| ||||||||||||||||||||||||||||||  ||||| |||||| || ||||||||||| ||||||    
T  1983162 ttgtaggaagcacagtgagaagaagtggaagtgtgagaagtgctcaaaattttatgttgttcaatcggattggaaagcacactca 1983246  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 52248506 - 52248460
Alignment:
Q  30 aaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtga 76  Q
    ||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  52248506 aaaaagcacttttgtagaaagcatggtgagaagaaatggaaatgtga 52248460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 12106124 - 12106172
Alignment:
Q  77 gaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactca 125  Q
    |||||||||||||  |||||||||||| || ||||||||||| ||||||    
T  12106124 gaagtgctcaaaattttatgctgttcaatcggattggaaagcacactca 12106172  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 46987823 - 46987775
Alignment:
Q  77 gaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactca 125  Q
    |||||||||||||  |||||||||||| || ||||||||||| ||||||    
T  46987823 gaagtgctcaaaattttatgctgttcaatcggattggaaagcacactca 46987775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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