View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-17 (Length: 287)
Name: NF4336-Insertion-17
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-17 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 19631893 - 19631624
Alignment:
| Q |
20 |
cgcatggacgagaagttagtgtaaacaatgcaatatttgttttttctttctcaggttgccaaaatagtttgatgcaaacaagggaaccttccaactatta |
119 |
Q |
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| T |
19631893 |
cgcatggacgagaagttagtgtaaacaatgtactatttgttttttctttctcaggttgccaaaatagtttgatgcaaacaagggaaccttccaactatta |
19631794 |
T |
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| Q |
120 |
tgaggaaa--gaataatgagtgtaaggggcggaggtatcaagataaaagttgaacatatggttagagacatcagaaacaaaagcactggtgtagctaaca |
217 |
Q |
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| T |
19631793 |
tgaggaaaaagaataataagtgtaaggggcggaggtatcaagataaaagttgaacatatggttagagacatcagaaaccaaagcatcggtgtagctaaca |
19631694 |
T |
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| Q |
218 |
attcaataaatgtcattcctaatctaaatttcataaacaaacgaaaattgattggtgacaatgaacttca |
287 |
Q |
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| T |
19631693 |
attcaataaatgtcattcctaatctaaatttcataaacaaacgaaaattgattggtgacaatgaacttca |
19631624 |
T |
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Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 287
Target Start/End: Original strand, 31784468 - 31784749
Alignment:
| Q |
6 |
aaaaatcacagactcgcatggacgagaagttagtgtaaacaatgcaatatttgttttttctttctcaggttgccaaaatagtttgatgcaaacaagggaa |
105 |
Q |
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| T |
31784468 |
aaaaatcacagactcgcatggacgagaagttagtgcaaacaatgcaatatttgttttttctttctcaggttaccaaaatagtttgatgcaaacaagggaa |
31784567 |
T |
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| Q |
106 |
ccttccaactattatgaggaaagaataatgagtgtaaggggcggaggtatcaagataaaagttgaacatatggttagagacatcagaaacaaaagcactg |
205 |
Q |
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| T |
31784568 |
ccttccaactattctgaggaaagaatgctgagtgtacggggcggaggtatcaagatcaaagttgaacatatggttagagacatcagaaaccaaagcatcg |
31784667 |
T |
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| Q |
206 |
gtgtagctaacaattcaataaatgtcattcctaatctaaatttcataaacaaacgaaaattgattggtgacaatgaacttca |
287 |
Q |
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| T |
31784668 |
gtgtacctaacaattcaataaacatcattcctaatctaaatttcataaacaaacgaaaattgattggtgacaatgaacttca |
31784749 |
T |
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