View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-18 (Length: 49)
Name: NF4336-Insertion-18
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-18 |
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Alignment Details
Target: chr5 (Bit Score: 46; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-18
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 41967355 - 41967400
Alignment:
| Q |
3 |
aattaaaggttactaatccaaatagtcttgggtccaagaatgtaaa |
48 |
Q |
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| T |
41967355 |
aattaaaggttactaatccaaatagtcttgggtccaagaatgtaaa |
41967400 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 1234245 - 1234290
Alignment:
| Q |
3 |
aattaaaggttactaatccaaatagtcttgggtccaagaatgtaaa |
48 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
1234245 |
aattaaaggttaataatccaaatagtcttaggtccaagaatgtaaa |
1234290 |
T |
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