View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-26 (Length: 179)
Name: NF4336-Insertion-26
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-26 |
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| [»] scaffold0013 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 91; Significance: 2e-44; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 102371 - 102281
Alignment:
| Q |
89 |
gaaagatgtggaggctgaagatagcagaaggtgggaataacccatacttattcagtacaaataactttgtgggaagacaaacatgggagta |
179 |
Q |
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| T |
102371 |
gaaagatgtggaggctgaagatagcagaaggtgggaataacccatacttattcagtacaaataactttgtgggaagacaaacatgggagta |
102281 |
T |
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Target: chr4 (Bit Score: 65; Significance: 8e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 154294 - 154382
Alignment:
| Q |
91 |
aagatgtggaggctgaagatagcagaaggtgggaataacccatacttattcagtacaaataactttgtgggaagacaaacatgggagta |
179 |
Q |
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| T |
154294 |
aagatgtggaagctgaagatagcagaaggtgggaatgagccatacttattcagcacaaatagttttgtgggaagacaaacatgggagta |
154382 |
T |
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Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 10307867 - 10307782
Alignment:
| Q |
91 |
aagatgtggaggctgaagatagcagaaggtgggaataacccatacttattcagtacaaataactttgtgggaagacaaacatggga |
176 |
Q |
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| T |
10307867 |
aagatgtggaagctgaagatagcagaaggtgggaatgacccatacttattcagcacaaacaattctgtggggagccaaacatggga |
10307782 |
T |
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Target: chr4; HSP #3
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 100415 - 100503
Alignment:
| Q |
91 |
aagatgtggaggctgaagatagcagaaggtgggaataacccatacttattcagtacaaataactttgtgggaagacaaacatgggagta |
179 |
Q |
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| T |
100415 |
aagatgtggaagctgaagattggagagggaaagaatgagccatacttattcagcacaaataattttgtgggaagacaaacatgggagta |
100503 |
T |
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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 86 - 179
Target Start/End: Original strand, 13041209 - 13041302
Alignment:
| Q |
86 |
aaagaaagatgtggaggctgaagatagcagaaggtgggaataacccatacttattcagtacaaataactttgtgggaagacaaacatgggagta |
179 |
Q |
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| T |
13041209 |
aaagaaagatgtggaggttgaagatagcagatggtggtaatgacccatacatattcagcacaaacaactttgtaggaagacaaatatgggagta |
13041302 |
T |
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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 5681064 - 5680977
Alignment:
| Q |
91 |
aagatgtggaggctgaagatagcagaaggtgggaataacccatacttattcagtacaaataactttgtgggaagacaaacatgggagt |
178 |
Q |
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| T |
5681064 |
aagatgtggaggctgaagatagcagatggtgggaaggatccatacatattcagtacaaataactttgtggggaggcagacatgggagt |
5680977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 5701117 - 5701030
Alignment:
| Q |
91 |
aagatgtggaggctgaagatagcagaaggtgggaataacccatacttattcagtacaaataactttgtgggaagacaaacatgggagt |
178 |
Q |
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| T |
5701117 |
aagatgtggaggctgaagatagcagatggggggaatgatccatacatattcagtacaaataactttttagggaggcagacatgggagt |
5701030 |
T |
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Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 5731706 - 5731619
Alignment:
| Q |
91 |
aagatgtggaggctgaagatagcagaaggtgggaataacccatacttattcagtacaaataactttgtgggaagacaaacatgggagt |
178 |
Q |
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| T |
5731706 |
aagatgtggaggctgaagatagcagatggggggaatgatccacacatattcagtacaaataactttttagggaggcagacatgggagt |
5731619 |
T |
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Target: chr3 (Bit Score: 45; Significance: 7e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 12143217 - 12143133
Alignment:
| Q |
92 |
agatgtggaggctgaagatagcagaaggtgggaataacccatacttattcagtacaaataactttgtgggaagacaaacatggga |
176 |
Q |
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| T |
12143217 |
agatgtggaggcttaagatagcagatggtgggaaggacccttacatattcaccacaaataactttgtaggaagacagacatggga |
12143133 |
T |
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