View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-28 (Length: 116)
Name: NF4336-Insertion-28
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-28 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 96; Significance: 1e-47; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-47
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 34760121 - 34760006
Alignment:
| Q |
1 |
ctttacaatgtatctaattgctttcacaggaacttgctgtaaaaatggcctccagttcagttgatgtgattggtagacgtaagcataagctttccaagag |
100 |
Q |
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| T |
34760121 |
ctttacaatgtatctaattgctttcacaggaacttgcattaaaaatggcctccagttccgttgatgcgattggtagacgtaagcataagctttcctagag |
34760022 |
T |
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| Q |
101 |
gcgaaaatccagcaag |
116 |
Q |
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| T |
34760021 |
gcgaaaatccagcaag |
34760006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 34747687 - 34747572
Alignment:
| Q |
1 |
ctttacaatgtatctaattgctttcacaggaacttgctgtaaaaatggcctccagttcagttgatgtgattggtagacgtaagcataagctttccaagag |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||| ||||| |
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| T |
34747687 |
ctttacaatgtatctaactgctttcacaggaacttgctgtaaaaatggtctccagttccgttgatgcgattggtagatgtaagcataagctttctaagag |
34747588 |
T |
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| Q |
101 |
gcgaaaatccagcaag |
116 |
Q |
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| T |
34747587 |
gcaaaaatccaacaag |
34747572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 8e-37
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 34752304 - 34752211
Alignment:
| Q |
3 |
ttacaatgtatctaattgctttcacaggaacttgctgtaaaaatggcctccagttcagttgatgtgattggtagacgtaagcataagctttcca |
96 |
Q |
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| T |
34752304 |
ttacaatgtatttaattgctttcacaggaacttgctgtaaaaatggcctccagttccgttgatgcgattgatagacgtaagcataagctttcca |
34752211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 34756024 - 34755909
Alignment:
| Q |
1 |
ctttacaatgtatctaattgctttcacaggaacttgctgtaaaaatggcctccagttcagttgatgtgattggtagacgtaagcataagctttccaagag |
100 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
34756024 |
ctttaaaatgtatctaattgctttcgcaggaacttgctgtaaaaatgacctccatctccgttgatgcgattggtagacgtaagcataagctttctaagag |
34755925 |
T |
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| Q |
101 |
gcgaaaatccagcaag |
116 |
Q |
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| T |
34755924 |
gcaaaattccatcaag |
34755909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 34743123 - 34743009
Alignment:
| Q |
1 |
ctttacaatgtatctaattgctttcacaggaacttgctgtaaaaatggcctccagttcagttgatgtgattggtagacgtaagcataagctttccaagag |
100 |
Q |
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||||||||||||||||||| ||||| |||||||||||| |||||||| | ||||| ||||||| | | ||||||||||||| ||||||||| |||| |
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| T |
34743123 |
ctttacaatgtatctaattattttcataggaacttgctgcaaaaatggacaatagttctgttgatgagttgggtagacgtaagcgtaagctttctaagat |
34743024 |
T |
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| Q |
101 |
gcgaaaatccagcaa |
115 |
Q |
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|| |||||||||||| |
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| T |
34743023 |
gcaaaaatccagcaa |
34743009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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