View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-3 (Length: 262)
Name: NF4336-Insertion-3
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 39000922 - 39000661
Alignment:
| Q |
1 |
tcttcaacctttttcattatttcctctccactattattttgcaagtctacaacaacagatttgacttcaacatttccaaaagttttatctataatctctt |
100 |
Q |
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| T |
39000922 |
tcttcaaccttattcattatttcctctccactattattttgcaagtctacaacaacagatttgacttcaacatttccaaaagttttatctataatctctt |
39000823 |
T |
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| Q |
101 |
ttgatgttgcctcaagcttaagagggcttctaccaactaagagaatgttgagtccctttaatgcaaactcaaaagccatggctttgcctattccatcggt |
200 |
Q |
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| T |
39000822 |
ttgatgttgcctcaagcttaagagggcttctaccaactaagagaatgttgagtccctttaatgcaaactcaaaagccatggctttgcctattccatcggt |
39000723 |
T |
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| Q |
201 |
ggagccggtgattatagcccatgaaccatagtctatgagttttttgtgtggtcttaagaaca |
262 |
Q |
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| T |
39000722 |
ggagccggtgattatagcccatgaaccatagtctatgagttttttgtgtggtcttaagaaca |
39000661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 38996281 - 38996030
Alignment:
| Q |
11 |
ttttcattatttcctctccactattattttgcaagtctacaacaacagatttgacttcaacatttccaaaagttttatctataatctcttttgatgttgc |
110 |
Q |
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||||||||||||||||||||||| ||||||||| ||||| ||||||| | || || ||||||||||||||| || ||||||| ||||||||||||||||| |
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| T |
38996281 |
ttttcattatttcctctccactaatattttgcatgtctataacaacaaactttacctcaacatttccaaaatttctatctattatctcttttgatgttgc |
38996182 |
T |
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| Q |
111 |
ctcaagcttaagagggcttctaccaactaagagaatgttgagtccctttaatgcaaactcaaaagccatggctttgcctattccatcggtggagccggtg |
210 |
Q |
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| T |
38996181 |
ttcaagtttaagagggtttctaccaactaagagaatgttgagtccctttgatgcaaattcaaaagccatggctttgcctattccatcggtggagccggtg |
38996082 |
T |
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| Q |
211 |
attatagcccatgaaccatagtctatgagttttttgtgtggtcttaagaaca |
262 |
Q |
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|||||||||||||||||||||||| ||||||||||| | ||||| ||||||| |
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| T |
38996081 |
attatagcccatgaaccatagtctttgagttttttgcgaggtctcaagaaca |
38996030 |
T |
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