View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336-Insertion-30 (Length: 274)

Name: NF4336-Insertion-30
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336-Insertion-30
NF4336-Insertion-30
[»] chr2 (1 HSPs)
chr2 (1-274)||(17143631-17143904)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 17143904 - 17143631
Alignment:
Q  1 gatttcattccaaacaaaacacttaacttacctaaggaactagaatacaaaagcattaaatccttctgagaaattgagacaataaatgagctggccaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17143904 gatttcattccaaacaaaacacttaacttacctaaggaactagaatacaaaagcattaaatccttctgagaaattgagacaataaatgagctggccaaaa 17143805  T
Q  101 ctgtaaaagaatcacatgaaaatgggaagaaataaaacaccaatgatggggtcccatgttgcacctctcctaccctcatgactagtttgtggtgtctaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17143804 ctgtaaaagaatcacatgaaaatgggaagaaataaaacaccaatgatggggtcccatgttgcacctctcctaccctcatgactagtttgtggtgtctaaa 17143705  T
Q  201 cgaaacaaataaccaaaatgtcctttaacaatgagacagaatttgtagatgcatatatagccatctcattgtat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17143704 cgaaacaaataaccaaaatgtcctttaacaatgagacagaatttgtagatgcatatatagccatctcattgtat 17143631  T

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