View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-31 (Length: 215)
Name: NF4336-Insertion-31
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-31 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 9494068 - 9493889
Alignment:
| Q |
1 |
actcccatataagaaaataaaagagagaaagaatgtctgtcttcattgtatctccttcttttcatctagatggaacaaccatacaaaatcacaatgaaat |
100 |
Q |
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| T |
9494068 |
actcccatataagaaaataaaagagagagaatgtttttgtcttcattgtatctccttcttttcatttagatggaacaaccatacaaaatcacaatgaaat |
9493969 |
T |
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| Q |
101 |
tagacagagaagaataatcgctcttccacttcctcctcaacctctcccgtttctttcctctcaaatctcatcttctttctg |
181 |
Q |
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| T |
9493968 |
tggacagagaagaataatggctcttccacttcctcctcaacctctccc-tttctttcctctcaaatctcatcttctttctg |
9493889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 41120439 - 41120618
Alignment:
| Q |
1 |
actcccatataagaaaataaaagagagaaagaatgtctgtcttcattgtatctccttcttttcatctagatggaacaaccatacaaaatcacaatgaaat |
100 |
Q |
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| T |
41120439 |
actcccatataagaaaataaaagagagagaatgtttttgtcttcattgtatctccttcttttcatttagatggaacaaccatacaaaatcacaatgaaat |
41120538 |
T |
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| Q |
101 |
tagacagagaagaataatcgctcttccacttcctcctcaacctctcccgtttctttcctctcaaatctcatcttctttctg |
181 |
Q |
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| T |
41120539 |
tggacagagaagaataatggctcttccacttcctcctcaacctctccc-tttctttcctctcaaatctcatcttctttctg |
41120618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 102597 - 102531
Alignment:
| Q |
114 |
ataatcgctcttccacttcctcctcaacctctcccgtttctttcctctcaaatctcatcttctttctg |
181 |
Q |
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| T |
102597 |
ataatggctcttccacttcctcctcaacctctccc-tttctttcctctcaaatctcatcttctttctg |
102531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 107363 - 107452
Alignment:
| Q |
1 |
actcccatataagaaaataaaagagagaaagaatgtctgtcttcattgtatctccttcttttcatctagatggaacaaccatacaaaatca |
91 |
Q |
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|||||||||||||||||||||||||||| | | | ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
107363 |
actcccatataagaaaataaaagagagagaatgtttttgtcttcat-gtatctccttcttttcatttagatggaacaaccatacaaaatca |
107452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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