View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-42 (Length: 164)
Name: NF4336-Insertion-42
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-42 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 1e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 1e-73
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 5223475 - 5223638
Alignment:
| Q |
1 |
acaatgtatagaagaataattgggatattatcaagtttatttaagtatttatgaccatataattaaaatatgattctaaagtcaacattctgaccctgaa |
100 |
Q |
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| T |
5223475 |
acaatgtatagaagaacaattggggtactatcaagtttatttaagtatgtatgaccatataattaaaatatgactctaaagtcaacattctgaccctgaa |
5223574 |
T |
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| Q |
101 |
aaccaacaatctaaacaaagaagaacaactctgatactcaagagaaactctgatgacaaagcta |
164 |
Q |
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| T |
5223575 |
aaccaacaatctaaacaaagaagaacaactctgatattcaagagaaactctgatgacaaagcta |
5223638 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 4816174 - 4816264
Alignment:
| Q |
61 |
aattaaaatatgattctaaagtcaacattctgaccctgaaaaccaacaatctaaacaaagaagaacaactctgatactcaagagaaactct |
151 |
Q |
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| T |
4816174 |
aattaaaatttgactctaaagttaacattctggccttgaaagtcaatgatctaaacaaagaagaagaactttgatggtcaagagaagctct |
4816264 |
T |
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