View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336-Insertion-43 (Length: 301)

Name: NF4336-Insertion-43
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336-Insertion-43
NF4336-Insertion-43
[»] chr4 (5 HSPs)
chr4 (7-298)||(31245731-31246022)
chr4 (72-131)||(31477688-31477747)
chr4 (72-131)||(31483545-31483604)
chr4 (85-131)||(31502824-31502870)
chr4 (85-131)||(31527707-31527753)
[»] chr6 (6 HSPs)
chr6 (7-297)||(13609782-13610075)
chr6 (85-131)||(33058867-33058913)
chr6 (85-131)||(33389376-33389422)
chr6 (85-131)||(33643332-33643378)
chr6 (85-131)||(31561539-31561585)
chr6 (85-131)||(33411256-33411302)
[»] chr8 (1 HSPs)
chr8 (115-298)||(6472455-6472638)
[»] chr2 (1 HSPs)
chr2 (85-131)||(17439558-17439604)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 298
Target Start/End: Original strand, 31245731 - 31246022
Alignment:
Q  7 aaaaggacatctttctagatattgcatgtttcttttatgaaaaagaggagacgtatgtgaagagagttttagattttcgtggatttcatcctgaaattgg 106  Q
    ||||||| || ||| |||||||||| |||||||||||| |||||  |||||| || ||||| | ||||||||||||||||||||||||||||||||||||    
T  31245731 aaaaggatatatttttagatattgcttgtttcttttataaaaaatcggagacatacgtgaataaagttttagattttcgtggatttcatcctgaaattgg 31245830  T
Q  107 tttaagagttctcattgataaatcattcataacttgtgagaaggggagaatttttatgcatggtttgttcaaagaactaggcaagagtatcgttagagaa 206  Q
    ||||||||||||  ||||||| ||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  31245831 tttaagagttcttgttgataagtcattcataacctgtgagaacgggagaatttttatgcatgatttgttcaaagaactaggcaagagtatcgttagggaa 31245930  T
Q  207 aaatcacccaaagagccaagaaagtggaacaggttgtgggactacaaggatgtacacaatgttatctcagaatacatggtaaaatagttatt 298  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||    
T  31245931 aaatcacccaaagaaccaagaaagtggaacaggatgtgggactacaaggatgtccacaatgttatatcagaaaacatggtaaaatagttatt 31246022  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 31477688 - 31477747
Alignment:
Q  72 gttttagattttcgtggatttcatcctgaaattggtttaagagttctcattgataaatca 131  Q
    |||||| ||| | ||||||||||| | || ||||| ||||||||||||||||||||||||    
T  31477688 gttttaaattgttgtggatttcatgccgatattggattaagagttctcattgataaatca 31477747  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 31483545 - 31483604
Alignment:
Q  72 gttttagattttcgtggatttcatcctgaaattggtttaagagttctcattgataaatca 131  Q
    |||||| ||| | |||||||||||||||| ||||| |||||||||||  |||||||||||    
T  31483545 gttttaaattgttgtggatttcatcctgatattggattaagagttcttgttgataaatca 31483604  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 31502824 - 31502870
Alignment:
Q  85 gtggatttcatcctgaaattggtttaagagttctcattgataaatca 131  Q
    ||||||||||| |||| || || ||||||||||||||||||||||||    
T  31502824 gtggatttcatgctgatataggattaagagttctcattgataaatca 31502870  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 31527753 - 31527707
Alignment:
Q  85 gtggatttcatcctgaaattggtttaagagttctcattgataaatca 131  Q
    ||||||||||| |||| ||||| ||||||||||||||||| ||||||    
T  31527753 gtggatttcatgctgatattggattaagagttctcattgacaaatca 31527707  T

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Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 297
Target Start/End: Original strand, 13609782 - 13610075
Alignment:
Q  7 aaaaggacatctttctagatattgcatgtttcttttatgaaaaagag-gagacgtatgtgaagagagttttagattttcgtggatttcatcctgaaattg 105  Q
    ||||||| || ||||| |||||||| ||||||||| || | | |||| ||||| || ||||||| ||||||||||||||||||||||||||| |||||||    
T  13609782 aaaaggagatttttctggatattgcttgtttctttgat-agagagagcgagacatacgtgaagaaagttttagattttcgtggatttcatcccgaaattg 13609880  T
Q  106 gtttaagagttctcattgataaatcattcataacttgtgagaagggg---agaatttttatgcatggtttgttcaaagaactaggcaagagtatcgttag 202  Q
    | |||||||||||| ||||||||||||| ||||| | || || |      |  |||| ||||||| ||||||| |||||||| |||| ||||||| |||     
T  13609881 gcttaagagttctctttgataaatcattaataacctatgggaggttttctacgatttctatgcatcgtttgttaaaagaacttggcaggagtatcattaa 13609980  T
Q  203 agaaaaatcacccaaagagccaagaaagtggaacaggttgtgggactacaaggatgtacacaatgttatctcagaatacatggtaaaatagttat 297  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||| | ||||||||||| ||||    
T  13609981 agaaaaatcacccaaagaaccaagaaagtggaacaggttgtgggaccacaaggatgtccacaatgttatctcggaaaaaatggtaaaataattat 13610075  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 33058913 - 33058867
Alignment:
Q  85 gtggatttcatcctgaaattggtttaagagttctcattgataaatca 131  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  33058913 gtggatttcatgctgatattggattaagagttctcattgataaatca 33058867  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 33389422 - 33389376
Alignment:
Q  85 gtggatttcatcctgaaattggtttaagagttctcattgataaatca 131  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  33389422 gtggatttcatgctgatattggattaagagttctcattgataaatca 33389376  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 33643332 - 33643378
Alignment:
Q  85 gtggatttcatcctgaaattggtttaagagttctcattgataaatca 131  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  33643332 gtggatttcatgctgatattgggttaagagttctcattgataaatca 33643378  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 31561539 - 31561585
Alignment:
Q  85 gtggatttcatcctgaaattggtttaagagttctcattgataaatca 131  Q
    ||||||||||| |||| ||||| |||||||||||| |||||||||||    
T  31561539 gtggatttcatgctgatattggattaagagttctccttgataaatca 31561585  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 33411302 - 33411256
Alignment:
Q  85 gtggatttcatcctgaaattggtttaagagttctcattgataaatca 131  Q
    ||||||||||| |||| ||||| ||| ||||||||||||||||||||    
T  33411302 gtggatttcatgctgatattggattaggagttctcattgataaatca 33411256  T

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Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 115 - 298
Target Start/End: Complemental strand, 6472638 - 6472455
Alignment:
Q  115 ttctcattgataaatcattcataacttgtgagaaggggagaatttttatgcatggtttgttcaaagaactaggcaagagtatcgttagagaaaaatcacc 214  Q
    |||| ||||||||||||||||||||  | |||| ||||||||||| |||||||| ||||||||||||||| || ||||| ||||||||||||||||||      
T  6472638 ttctgattgataaatcattcataaccagcgagatggggagaatttgtatgcatgatttgttcaaagaacttgggaagagcatcgttagagaaaaatcaat 6472539  T
Q  215 caaagagccaagaaagtggaacaggttgtgggactacaaggatgtacacaatgttatctcagaatacatggtaaaatagttatt 298  Q
     ||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||||    
T  6472538 gaaagaaccaagaaagtggaactggttgtgggactacaaagatgttcacaatgttatctcagaaaacatggtaaagtagttatt 6472455  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 17439558 - 17439604
Alignment:
Q  85 gtggatttcatcctgaaattggtttaagagttctcattgataaatca 131  Q
    ||||||||||| |||| ||||| ||||||||||||||| ||||||||    
T  17439558 gtggatttcatgctgatattggattaagagttctcattaataaatca 17439604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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