View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-44 (Length: 226)
Name: NF4336-Insertion-44
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-44 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1522155 - 1521935
Alignment:
| Q |
1 |
tggtatcctctctagaaatccacaattgtttcctctcaattcttagttcctcttgtcttgttgaagtgtcgtcatgaagcttctcaaccggaggagcatc |
100 |
Q |
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| T |
1522155 |
tggtatcctctctagaaatccacgatcgtttcctctcaattgttagttcctcttgtctcattgaagcgtcgtcatgaagcttctcaaccggagttgcttc |
1522056 |
T |
|
| Q |
101 |
atggagattgcgggacgagaaaataggattccttgaaaacgatgttttgcgaatgttgtgcaaatcagaactgaaatgatagctaataacccgtagtttt |
200 |
Q |
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| T |
1522055 |
atggagtttgcgggacaagagaatagggttccatgaaaatgatgttttgcgaatgttgtgtaaatttgaacagaaataatggctaagaacctgtagtttt |
1521956 |
T |
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| Q |
201 |
tgaagggaaaaggcgcgcatc |
221 |
Q |
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| T |
1521955 |
tttagggcaaaggcacgcatc |
1521935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 90 - 226
Target Start/End: Original strand, 8520791 - 8520927
Alignment:
| Q |
90 |
ggaggagcatcatggagattgcgggacgagaaaataggattccttgaaaacgatgttttgcgaatgttgtgcaaatcagaactgaaatgatagctaataa |
189 |
Q |
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| T |
8520791 |
ggaggagtattatggagtttgcgggaagagagaatagggttccatgaaaacgatgttttgtgaatgttgtgcatatcagaactgaaataatagctaataa |
8520890 |
T |
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| Q |
190 |
cccgtagtttttgaagggaaaaggcgcgcatcatctt |
226 |
Q |
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| T |
8520891 |
cccgtagtttttgaagggaaaaggcgcgcatcatctt |
8520927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 15172417 - 15172323
Alignment:
| Q |
3 |
gtatcctctctagaaatccacaattgtttcctctcaattcttagttcctcttgtcttgttgaagtgtcgtcatgaagcttctcaaccggaggagc |
97 |
Q |
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| T |
15172417 |
gtatcctctctagaaatccacaattgtttcctctcatttgttagttcctcttgtcttgttgaagcatagtcaagaagcttctcaacaggaggagc |
15172323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 15164360 - 15164302
Alignment:
| Q |
95 |
agcatcatggagattgcgggacgagaaaataggattccttgaaaacgatgttttgcgaa |
153 |
Q |
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| T |
15164360 |
agcatcatggagtttgcgggacgagagaatcagattccatgaagacgatgttctgcgaa |
15164302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 221
Target Start/End: Complemental strand, 29709141 - 29709015
Alignment:
| Q |
95 |
agcatcatggagattgcgggacgagaaaataggattccttgaaaacgatgttttgcgaatgttgtgcaaatcagaactgaaatgatagctaataacccgt |
194 |
Q |
| |
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|||||||||||| |||||||| |||| ||| | |||| |||| | |||||| |||||| ||| || | ||| |||| ||||| |||||||| ||||||| |
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| T |
29709141 |
agcatcatggagtttgcgggaggagagaatcaggttccatgaagatgatgttctgcgaaagttttgtatatctgaaccgaaataatagctaagaacccgt |
29709042 |
T |
|
| Q |
195 |
agtttttgaagggaaaaggcgcgcatc |
221 |
Q |
| |
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| T |
29709041 |
agtttttttaggcaaaaggcgagcatc |
29709015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 55806531 - 55806657
Alignment:
| Q |
95 |
agcatcatggagattgcgggacgagaaaataggattccttgaaaacgatgttttgcgaatgttgtgcaaatcagaactgaaatgatagctaataacccgt |
194 |
Q |
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|||||||||||| |||||||| |||| ||| | |||| |||| | |||||| |||||| ||| || | ||| |||| ||||| ||||||| ||||||| |
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| T |
55806531 |
agcatcatggagtttgcgggaggagagaatcaggttccatgaagatgatgttctgcgaaagttttgtagatctgaaccgaaataatagctacgaacccgt |
55806630 |
T |
|
| Q |
195 |
agtttttgaagggaaaaggcgcgcatc |
221 |
Q |
| |
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|||| || ||| |||||||| ||||| |
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| T |
55806631 |
agttcttttaggcaaaaggcgagcatc |
55806657 |
T |
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