View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336-Insertion-58 (Length: 91)

Name: NF4336-Insertion-58
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336-Insertion-58
NF4336-Insertion-58
[»] chr1 (17 HSPs)
chr1 (7-91)||(14654419-14654503)
chr1 (7-91)||(14664210-14664294)
chr1 (7-91)||(14669788-14669872)
chr1 (7-91)||(14676576-14676660)
chr1 (7-91)||(14683694-14683778)
chr1 (14-91)||(14716242-14716319)
chr1 (7-91)||(14674426-14674509)
chr1 (7-91)||(14679804-14679887)
chr1 (7-91)||(14681544-14681627)
chr1 (7-91)||(14706032-14706116)
chr1 (7-91)||(14708522-14708606)
chr1 (7-91)||(14652469-14652553)
chr1 (7-91)||(14662260-14662344)
chr1 (31-91)||(33988038-33988098)
chr1 (54-91)||(28366278-28366315)
chr1 (56-91)||(38175609-38175644)
chr1 (7-91)||(14667190-14667273)
[»] chr2 (17 HSPs)
chr2 (7-91)||(30731952-30732036)
chr2 (31-91)||(8973280-8973340)
chr2 (31-91)||(8979290-8979350)
chr2 (31-91)||(9023415-9023475)
chr2 (31-91)||(32918049-32918108)
chr2 (31-91)||(8984661-8984721)
chr2 (31-91)||(9026754-9026814)
chr2 (31-91)||(9032021-9032081)
chr2 (56-91)||(43850042-43850077)
chr2 (31-91)||(9020815-9020875)
chr2 (31-91)||(9030366-9030426)
chr2 (60-91)||(9008018-9008049)
chr2 (62-91)||(2841096-2841125)
chr2 (31-91)||(8975663-8975723)
chr2 (31-91)||(8988423-8988483)
chr2 (31-91)||(9016461-9016521)
chr2 (60-91)||(30733985-30734016)
[»] chr8 (6 HSPs)
chr8 (31-91)||(41841231-41841291)
chr8 (31-91)||(44878951-44879011)
chr8 (31-91)||(44880910-44880970)
chr8 (56-91)||(42872529-42872564)
chr8 (63-91)||(40054312-40054340)
chr8 (60-91)||(10944478-10944509)
[»] chr6 (2 HSPs)
chr6 (31-91)||(10795969-10796029)
chr6 (54-91)||(10791731-10791768)
[»] chr4 (7 HSPs)
chr4 (31-91)||(50077278-50077338)
chr4 (51-91)||(11652471-11652511)
chr4 (55-91)||(49106608-49106644)
chr4 (31-91)||(49108712-49108772)
chr4 (54-91)||(3461221-3461258)
chr4 (64-91)||(26984746-26984773)
chr4 (64-91)||(26998819-26998846)
[»] chr5 (3 HSPs)
chr5 (31-91)||(1716531-1716591)
chr5 (56-91)||(7524961-7524996)
chr5 (63-91)||(3643640-3643668)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 1e-38; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 14654503 - 14654419
Alignment:
Q  7 agaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14654503 agaaagcaactgagaaaatgtctaatataaaagcagcagcttgtccatctttcaactcatacctttctcggccttttggctaaga 14654419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 14664294 - 14664210
Alignment:
Q  7 agaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14664294 agaaagcaactgagaaaatgtctaatataaaagcagcagcttgtccatctttcaactcatacctttctcggccttttggctaaga 14664210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-29
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 14669872 - 14669788
Alignment:
Q  7 agaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||||||| |||||| |||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||    
T  14669872 agaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggccttttggctaaga 14669788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-29
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 14676576 - 14676660
Alignment:
Q  7 agaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||||||| ||||||  ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14676576 agaaagcaactgagaagatgtctgttataaaagcggcagctagtccatatttcaactcatacctttctcggccttttggctaaga 14676660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-29
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 14683694 - 14683778
Alignment:
Q  7 agaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||||||| ||||||  ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14683694 agaaagcaactgagaagatgtctgttataaaagcggcagctagtccatatttcaactcatacctttctcggccttttggctaaga 14683778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-25
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 14716242 - 14716319
Alignment:
Q  14 aactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||||||| |||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||    
T  14716242 aactgagaagatgtctgatataaaagcagcaccgagttcatctttcaactcatacctttctcggccttttggctaaga 14716319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 5e-22
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 14674426 - 14674509
Alignment:
Q  7 agaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||| |||||| ||||| |||||||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||    
T  14674426 agaaagcaacggagaaa-tgtctgatataaaagcagcacctagccaatcttccaactcatacctttctcggccttttggctaaga 14674509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 5e-22
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 14679804 - 14679887
Alignment:
Q  7 agaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||| |||||| ||||| |||||||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||    
T  14679804 agaaagcaacggagaaa-tgtctgatataaaagcagcacctagccaatcttccaactcatacctttctcggccttttggctaaga 14679887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 5e-22
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 14681544 - 14681627
Alignment:
Q  7 agaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||| |||||| ||||| |||||||||||||| |||| |||| |||||||| |||||||||||||||||||||||||||    
T  14681544 agaaagcaacggagaaa-tgtctgatataaaagcagcacctagcccatttttcaacttatacctttctcggccttttggctaaga 14681627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 5e-22
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 14706032 - 14706116
Alignment:
Q  7 agaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||| |||||||||  | ||| |||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||    
T  14706032 agaaagaaactgagaacgtttctgatataaaagcagcaccgagcccatctttcaactcatacctttctcggccttttggctaaga 14706116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 5e-22
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 14708522 - 14708606
Alignment:
Q  7 agaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||||||| ||||||||||||  |||||||||||  ||  || |||||||||||||||||||||||||||||||||||||||||    
T  14708522 agaaagcaattgagaaaatgtcagatataaaagcactagtgagcccatctttcaactcatacctttctcggccttttggctaaga 14708606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 14652469 - 14652553
Alignment:
Q  7 agaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||| |||||||||| |||||| |||||| |||||||||| |||| || || || |||||||||||||||||||||||||||||    
T  14652469 agaaaacaactgagaagatgtctgatataagagcagcagctggtccttcattgaaatcatacctttctcggccttttggctaaga 14652553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 14662260 - 14662344
Alignment:
Q  7 agaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||| |||||||||| |||||| |||||| |||||||||| |||| || || || |||||||||||||||||||||||||||||    
T  14662260 agaaaacaactgagaagatgtctgatataagagcagcagctggtccttcattgaaatcatacctttctcggccttttggctaaga 14662344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 33988038 - 33988098
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||||    
T  33988038 atataaaagcataagtgagtccatctttcaactcatacctttctcggccttttggctaaga 33988098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 28366315 - 28366278
Alignment:
Q  54 tctttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28366315 tctttcaactcatacctttctcggccttttggctaaga 28366278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 38175644 - 38175609
Alignment:
Q  56 tttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||||||||||||||||||||||||||||||||||    
T  38175644 tttcaactcatacctttctcggccttttggctaaga 38175609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 14667273 - 14667190
Alignment:
Q  7 agaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||| |||||||||| |||||  |||||||||||||||    || || ||  ||||||||||||||||||||||||||||||||    
T  14667273 agaaaacaactgagaacatgtcagatataaaagcagcaggatctc-atgttgtaactcatacctttctcggccttttggctaaga 14667190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-29; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-29
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 30731952 - 30732036
Alignment:
Q  7 agaaagcaactgagaaaatgtctaatataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||||||| |||||| |||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||    
T  30731952 agaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggccttttggctaaga 30732036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 8973280 - 8973340
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||  ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  8973280 atataaaagcataagcgagttcatctttcaactcatacctttctcggccttttggctaaga 8973340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 8979290 - 8979350
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||  ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  8979290 atataaaagcataagcaagttcatctttcaactcatacctttctcggccttttggctaaga 8979350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 9023415 - 9023475
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||  ||| |||||| |||||||||||||||||||||||||||||||||||||    
T  9023415 atataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggctaaga 9023475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 32918049 - 32918108
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||    
T  32918049 atataaaagcagcagctagtcta-cattcaactcatacctttctcggccttttggctaaga 32918108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 8984661 - 8984721
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||  ||| ||| ||| ||||||||||||||||||||||||||||||||||||    
T  8984661 atataaaagcataagcaagttcatatttcaactcatacctttctcggccttttggctaaga 8984721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 9026754 - 9026814
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||  ||| | | ||||||||||||||||||||||||||||||||||||||||    
T  9026754 atataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggctaaga 9026814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 9032021 - 9032081
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||  ||| | | |||||||||||||||||||||||||||||||||| |||||    
T  9032021 atataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggttaaga 9032081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 43850042 - 43850077
Alignment:
Q  56 tttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||||||||||||||||||||||||||||||||||    
T  43850042 tttcaactcatacctttctcggccttttggctaaga 43850077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 9020815 - 9020875
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||| ||  ||| ||| |||||||||| |||||| ||||||||||||||||||||||    
T  9020815 atataaaaccataagcgagttcatctttcaattcatacatttctcggccttttggctaaga 9020875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 9030366 - 9030426
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||  ||| ||| ||||||||||||||||  ||||| ||||||||||||||||    
T  9030366 atataaaagcataagcaagttcatctttcaactcatatttttcttggccttttggctaaga 9030426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 91
Target Start/End: Original strand, 9008018 - 9008049
Alignment:
Q  60 aactcatacctttctcggccttttggctaaga 91  Q
    ||||||||||||||||||||||||||||||||    
T  9008018 aactcatacctttctcggccttttggctaaga 9008049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 91
Target Start/End: Complemental strand, 2841125 - 2841096
Alignment:
Q  62 ctcatacctttctcggccttttggctaaga 91  Q
    ||||||||||||||||||||||||||||||    
T  2841125 ctcatacctttctcggccttttggctaaga 2841096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 8975663 - 8975723
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||  ||| |||||| |||||||||||||  |||||  |||||||||||||||    
T  8975663 atataaaagcataagcgagtccaactttcaactcatatttttctaagccttttggctaaga 8975723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 8988423 - 8988483
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||  ||| ||| |||||||||||| ||||| |||| ||||||||||| ||||    
T  8988423 atataaaagcataagcgagttcatctttcaacttataccattcttggccttttggcgaaga 8988483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 9016461 - 9016521
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||  ||| ||| ||||||| ||||||||||||  ||| ||||||||||||||    
T  9016461 atataaaagcataagcgagttcatcttttaactcataccttattcgaccttttggctaaga 9016521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 91
Target Start/End: Original strand, 30733985 - 30734016
Alignment:
Q  60 aactcatacctttctcggccttttggctaaga 91  Q
    |||| |||||||||||||||||||||||||||    
T  30733985 aacttatacctttctcggccttttggctaaga 30734016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 41841291 - 41841231
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||| ||| |  |||||||||||||||||||||||||||||||||||||||||    
T  41841291 atataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggctaaga 41841231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 44878951 - 44879011
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||||||||||  || || ||| | |||||||||||||||||||||||||||||||||||    
T  44878951 atataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaaga 44879011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 44880970 - 44880910
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||||||||||  || || ||| | |||||||||||||||||||||||||||||||||||    
T  44880970 atataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaaga 44880910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 42872564 - 42872529
Alignment:
Q  56 tttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||||||||||||||||||||||||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaaga 42872529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 91
Target Start/End: Original strand, 40054312 - 40054340
Alignment:
Q  63 tcatacctttctcggccttttggctaaga 91  Q
    |||||||||||||||||||||||||||||    
T  40054312 tcatacctttctcggccttttggctaaga 40054340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 91
Target Start/End: Complemental strand, 10944509 - 10944478
Alignment:
Q  60 aactcatacctttctcggccttttggctaaga 91  Q
    ||||||||||||||||| ||||||||||||||    
T  10944509 aactcatacctttctcgaccttttggctaaga 10944478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 10796029 - 10795969
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||| ||| ||  | ||||||||||||||||||||||||||||||||||||||    
T  10796029 atataaaagcagaagccagctcttctttcaactcatacctttctcggccttttggctaaga 10795969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 10791768 - 10791731
Alignment:
Q  54 tctttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10791768 tctttcaactcatacctttctcggccttttggctaaga 10791731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.000000000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 50077338 - 50077278
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||| ||| ||  | ||||||||||||||||||||||||||||||||||||||    
T  50077338 atataaaagcagaagccagctcttctttcaactcatacctttctcggccttttggctaaga 50077278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 11652511 - 11652471
Alignment:
Q  51 ccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  11652511 ccatcttttaactcatacctttctcggccttttggctaaga 11652471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 49106644 - 49106608
Alignment:
Q  55 ctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||||||||||||||||||||||||||||||||    
T  49106644 ctttcaactcatacctttctcggccttttggctaaga 49106608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 49108772 - 49108712
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||| ||| ||| || | || ||||||||||||||||||||||||||||||||||||    
T  49108772 atataaaatcagaagccagcctatatttcaactcatacctttctcggccttttggctaaga 49108712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 3461258 - 3461221
Alignment:
Q  54 tctttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||||| |||||||||||||||||||||||||||||    
T  3461258 tctttcaattcatacctttctcggccttttggctaaga 3461221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 91
Target Start/End: Complemental strand, 26984773 - 26984746
Alignment:
Q  64 catacctttctcggccttttggctaaga 91  Q
    ||||||||||||||||||||||||||||    
T  26984773 catacctttctcggccttttggctaaga 26984746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 91
Target Start/End: Complemental strand, 26998846 - 26998819
Alignment:
Q  64 catacctttctcggccttttggctaaga 91  Q
    ||||||||||||||||||||||||||||    
T  26998846 catacctttctcggccttttggctaaga 26998819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 1716591 - 1716531
Alignment:
Q  31 atataaaagcagcagctagtccatctttcaactcatacctttctcggccttttggctaaga 91  Q
    ||||||||  || ||| ||| ||||||| ||||||||||||||||||||||||||||||||    
T  1716591 atataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaaga 1716531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 7524961 - 7524996
Alignment:
Q  56 tttcaactcatacctttctcggccttttggctaaga 91  Q
    |||||| |||||||||||||||||||||||||||||    
T  7524961 tttcaagtcatacctttctcggccttttggctaaga 7524996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 91
Target Start/End: Original strand, 3643640 - 3643668
Alignment:
Q  63 tcatacctttctcggccttttggctaaga 91  Q
    |||||||||||||||||||||||||||||    
T  3643640 tcatacctttctcggccttttggctaaga 3643668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University