View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-66 (Length: 296)
Name: NF4336-Insertion-66
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-66 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 57 - 296
Target Start/End: Complemental strand, 9631111 - 9630876
Alignment:
| Q |
57 |
gtattgatgagtggtaccatttatgaatttattttgctttaaatacgattactatgtaccaaaacaaaatcacattaacacgataattattcattcatta |
156 |
Q |
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| T |
9631111 |
gtattgatgggtggtaccatttatgaaattattttgctttatatacgattactatgtaccaaaacaaaatcacattaacacgataattattcatt----a |
9631016 |
T |
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| Q |
157 |
agctctctgttcattaatcgcaacatggctattgttcttcatcctataatttcttttgtagtacttttttctcttctgattaacccttgttattgcgtca |
256 |
Q |
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| T |
9631015 |
agctctctgttcattaatcgcaacatggctattgttcttcatcgtataatttcttttgcagtacttttttctcttctgattaacccttgttattgcctca |
9630916 |
T |
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| Q |
257 |
accctaaattgttgaatgtttctgaaattcaaaatgttaa |
296 |
Q |
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| T |
9630915 |
accctaaattgttcaatgtttctgaaattcaaaatgttaa |
9630876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 292
Target Start/End: Complemental strand, 17446382 - 17446267
Alignment:
| Q |
180 |
catggctattgttcttcatcctataatttcttttgtagtacttttttctcttctgattaacccttgttattgcgtcaaccctaaattgtt---gaatgtt |
276 |
Q |
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| T |
17446382 |
catggctgttgttcttaattgcatgatttctcttgtaatattttcttctcttatgttaaacccttgttattgcctcaaccgtaaattgtttaaaaatgtt |
17446283 |
T |
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| Q |
277 |
tctgaaattcaaaatg |
292 |
Q |
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| T |
17446282 |
tctgaaattcaaaatg |
17446267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 9631195 - 9631140
Alignment:
| Q |
6 |
aaacaaatatgtacagttcctctgcnnnnnnnttaaacaaaaatgtacaccgtatt |
61 |
Q |
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| T |
9631195 |
aaacaaatatgtacagttcctctgcaaaaaaattaaacaaaaatgtacaccgtatt |
9631140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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