View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-67 (Length: 296)
Name: NF4336-Insertion-67
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-67 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 1139471 - 1139176
Alignment:
| Q |
1 |
cttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcatt |
100 |
Q |
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| T |
1139471 |
cttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcatt |
1139372 |
T |
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| Q |
101 |
catgtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaaggttatgagtaatagccgaacaattttgtttgatagaaatattg |
200 |
Q |
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| T |
1139371 |
catgtcatgcatagccttaggaatctttaataattcttccaatccatttgaagtaaggttatgagtaatagccgaacaattttgtttgatagaaatattg |
1139272 |
T |
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| Q |
201 |
gtttggttattttggtcatatgatgtttttgagatgttggataatagtattggagaataatgtgaaaaatcaggtggtggattgaggctaaaggat |
296 |
Q |
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| T |
1139271 |
gtttggttattttggtcatatgatgtttttgagatgttggatagtagtattggaggagaatgtgaaaaatcaggtggtggattgaggctaaaggat |
1139176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 1136260 - 1135968
Alignment:
| Q |
1 |
cttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcatt |
100 |
Q |
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| T |
1136260 |
cttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcgtt |
1136161 |
T |
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| Q |
101 |
catgtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaaggttatgagtaatagccgaacaattttgtttgatagaaatattg |
200 |
Q |
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| T |
1136160 |
catgtcatgcatagccttaggaatctttaataattcttccaaaccatttgaagtaaggttatgag---tagccggacaattttgtttgatagaaatattg |
1136064 |
T |
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| Q |
201 |
gtttggttattttggtcatatgatgtttttgagatgttggataatagtattggagaataatgtgaaaaatcaggtggtggattgaggctaaaggat |
296 |
Q |
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| T |
1136063 |
gtttggttatcatggtcatatgatgtttttgagatgttggataataatattggaggagaatatgaaaaatgaggtggtggattgaggcttaaggat |
1135968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 54479269 - 54479475
Alignment:
| Q |
4 |
ttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcattcat |
103 |
Q |
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| T |
54479269 |
ttgtcaagaacataaacgcaacctttggtgtttgtttgaatggagttttatgaatcataggttccaatgaagctctccaaaacaattcatcctcattcat |
54479368 |
T |
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| Q |
104 |
gtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaaggttatgagtaatagccgaacaattttgtttgatagaaatattggtt |
203 |
Q |
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| T |
54479369 |
gtcatgcatagccataggaatcttcaacaagtctttcaacccatgtgaagtaaggttattagtaacaaccaagcaatattttttgatagaaatatttgtt |
54479468 |
T |
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| Q |
204 |
tggttat |
210 |
Q |
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| T |
54479469 |
tggttat |
54479475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 31269135 - 31269290
Alignment:
| Q |
1 |
cttttgtcaagaacatgaatgcaacctttggtgtttgtttaaatggagttttatgaatcataggagccaatgaagctctccaaaataattcatcctcatt |
100 |
Q |
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|||| ||||| ||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||| || |||||||||||||||||||| || ||||| |
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| T |
31269135 |
ctttggtcaaaaacataaatgcaacctttggtatttgtttgaatggaggtttatgaatcataggaatcatcgaagctctccaaaataattcctcttcatt |
31269234 |
T |
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| Q |
101 |
catgtcatgcatagccttaggaatctttaataattcttccaatccattttaagtaa |
156 |
Q |
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||| |||||||||||| | |||||||| || ||||| ||||| |||||| |||||| |
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| T |
31269235 |
catatcatgcatagccattggaatcttcaaaaattcctccaacccatttgaagtaa |
31269290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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