View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-7 (Length: 43)
Name: NF4336-Insertion-7
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-7 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 35; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 1432918 - 1432880
Alignment:
| Q |
5 |
catatctgagtcacagcttacaagtactacaaatttgaa |
43 |
Q |
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| T |
1432918 |
catatctgagtcacagcttacaagtactgcaaatttgaa |
1432880 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1445437 - 1445396
Alignment:
| Q |
1 |
atatcatatctgagtcacagcttacaagtactacaaatttga |
42 |
Q |
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| T |
1445437 |
atatcatatctgattcacaacttacaagtactccaaatttga |
1445396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1451613 - 1451572
Alignment:
| Q |
1 |
atatcatatctgagtcacagcttacaagtactacaaatttga |
42 |
Q |
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| T |
1451613 |
atatcatatctgattcacaacttacaagtactgcaaatttga |
1451572 |
T |
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