View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336-Insertion-71 (Length: 249)

Name: NF4336-Insertion-71
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336-Insertion-71
NF4336-Insertion-71
[»] chr5 (1 HSPs)
chr5 (51-249)||(29307852-29308050)
[»] chr6 (2 HSPs)
chr6 (10-48)||(2615065-2615103)
chr6 (10-54)||(34176999-34177043)
[»] chr8 (7 HSPs)
chr8 (10-46)||(40389209-40389245)
chr8 (10-45)||(34101677-34101712)
chr8 (10-45)||(37618293-37618328)
chr8 (10-56)||(41709946-41709992)
chr8 (10-50)||(10467233-10467273)
chr8 (14-54)||(12753217-12753257)
chr8 (10-54)||(34063297-34063341)
[»] chr4 (7 HSPs)
chr4 (10-54)||(44324212-44324256)
chr4 (10-49)||(2114208-2114247)
chr4 (10-52)||(29593067-29593109)
chr4 (10-55)||(50727782-50727827)
chr4 (10-55)||(50735796-50735841)
chr4 (10-54)||(3649808-3649852)
chr4 (11-55)||(13110479-13110523)
[»] chr3 (4 HSPs)
chr3 (10-54)||(33364649-33364693)
chr3 (10-47)||(1344585-1344622)
chr3 (14-50)||(24571455-24571491)
chr3 (10-54)||(40094673-40094717)
[»] chr1 (8 HSPs)
chr1 (10-54)||(8839075-8839119)
chr1 (10-45)||(32289305-32289340)
chr1 (10-45)||(38663285-38663320)
chr1 (10-49)||(46155085-46155124)
chr1 (10-48)||(32270531-32270569)
chr1 (11-45)||(51264674-51264708)
chr1 (14-55)||(45659003-45659044)
chr1 (10-50)||(6711002-6711042)
[»] chr7 (6 HSPs)
chr7 (10-49)||(18386697-18386736)
chr7 (10-45)||(43158573-43158608)
chr7 (10-57)||(46633865-46633912)
chr7 (10-54)||(3891920-3891964)
chr7 (10-50)||(3922585-3922625)
chr7 (9-49)||(32873655-32873695)
[»] chr2 (2 HSPs)
chr2 (10-45)||(40692466-40692501)
chr2 (12-45)||(2086233-2086266)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 51 - 249
Target Start/End: Complemental strand, 29308050 - 29307852
Alignment:
Q  51 cttagtcacttacaaagttgctcttaacctaatatagatgtttttcaagtattttatactatcctcaagactccaaaaataatatgatgttcgngtaaaa 150  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  29308050 cttagtcacttacaaaattgctcttaacctaatatagatgttttgcaagtattttatgctatcctcaagactccaaaaatagtatgatgttcgagtaaaa 29307951  T
Q  151 atgaccaactccttacattaaaaatctggtcaaacttcgtcgattcaataaaatcaccctataattcttgaagttgatttttcaaatagttatagatga 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29307950 atgaccaactccttacattaaaaatctggtcaaacttcgtcgattcaataaaatcaccctataattcttgaagttgatttttcaaatagttatagatga 29307852  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 2615065 - 2615103
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacaca 48  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  2615065 gttctgtcttgtccttcattttttagcaaatcaaacaca 2615103  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 34176999 - 34177043
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacacactta 54  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||    
T  34176999 gttctgtcttgtccttcattttttagcaaatcaaacgcaccctta 34177043  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 40389209 - 40389245
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaaca 46  Q
    |||||||| ||||||||||||||||||||||||||||    
T  40389209 gttctgtcatgtccttcattttctagcaaatcaaaca 40389245  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 34101677 - 34101712
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaac 45  Q
    |||||||||||||||||||||| |||||||||||||    
T  34101677 gttctgtcttgtccttcattttttagcaaatcaaac 34101712  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 37618328 - 37618293
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaac 45  Q
    |||||||| |||||||||||||||||||||||||||    
T  37618328 gttctgtcatgtccttcattttctagcaaatcaaac 37618293  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 41709946 - 41709992
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacacacttagt 56  Q
    |||||||| ||||||||||||| ||||||||||||| ||| ||||||    
T  41709946 gttctgtcctgtccttcattttttagcaaatcaaacgcacccttagt 41709992  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 10467233 - 10467273
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacaca 50  Q
    |||||||| ||||||||||||| ||||||||||||| ||||    
T  10467233 gttctgtcctgtccttcattttttagcaaatcaaacgcaca 10467273  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 12753257 - 12753217
Alignment:
Q  14 tgtcttgtccttcattttctagcaaatcaaacacacactta 54  Q
    |||| ||||||||||||| ||||||||||||||||| ||||    
T  12753257 tgtcctgtccttcattttttagcaaatcaaacacactctta 12753217  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 34063297 - 34063341
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacacactta 54  Q
    |||||||| ||||||||||||| ||||||||||||| ||| ||||    
T  34063297 gttctgtcatgtccttcattttttagcaaatcaaacgcactctta 34063341  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 44324256 - 44324212
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacacactta 54  Q
    |||||||| ||||||||||||||||||||||||||| ||| ||||    
T  44324256 gttctgtcatgtccttcattttctagcaaatcaaacgcaccctta 44324212  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 2114208 - 2114247
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacac 49  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  2114208 gttctgtcatgtccttcattttttagcaaatcaaacacac 2114247  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 29593067 - 29593109
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacacact 52  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||    
T  29593067 gttctgtcctgtccttcattttttagcaaatcaaacgcacact 29593109  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 50727827 - 50727782
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacacacttag 55  Q
    |||||||| ||||||||||||| ||||||||||||| ||| |||||    
T  50727827 gttctgtcatgtccttcattttttagcaaatcaaacgcacccttag 50727782  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 50735841 - 50735796
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacacacttag 55  Q
    |||||||| ||||||||||||| ||||||||||||| ||| |||||    
T  50735841 gttctgtcatgtccttcattttttagcaaatcaaacgcacccttag 50735796  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 3649808 - 3649852
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacacactta 54  Q
    |||||||||||||||||||||| || |||||||||| ||| ||||    
T  3649808 gttctgtcttgtccttcattttttaacaaatcaaacgcaccctta 3649852  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 13110479 - 13110523
Alignment:
Q  11 ttctgtcttgtccttcattttctagcaaatcaaacacacacttag 55  Q
    ||||||| |||| |||||||| ||||||||||||||||| |||||    
T  13110479 ttctgtcatgtctttcattttttagcaaatcaaacacacccttag 13110523  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 33364693 - 33364649
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacacactta 54  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||    
T  33364693 gttctgtcttgtccttcattttttagcaaatcaaacgcaccctta 33364649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 1344622 - 1344585
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacac 47  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  1344622 gttctgtcctgtccttcattttttagcaaatcaaacac 1344585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 24571455 - 24571491
Alignment:
Q  14 tgtcttgtccttcattttctagcaaatcaaacacaca 50  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  24571455 tgtcctgtccttcattttttagcaaatcaaacacaca 24571491  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 40094673 - 40094717
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacacactta 54  Q
    |||||||| ||||||||||||| ||||||||||||| ||| ||||    
T  40094673 gttctgtcctgtccttcattttttagcaaatcaaacgcaccctta 40094717  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 8839075 - 8839119
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacacactta 54  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||    
T  8839075 gttctgtcttgtccttcattttttagcaaatcaaacgcactctta 8839119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 32289340 - 32289305
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaac 45  Q
    |||||||||||||||||||||| |||||||||||||    
T  32289340 gttctgtcttgtccttcattttttagcaaatcaaac 32289305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 38663285 - 38663320
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaac 45  Q
    |||||||||||||||||||||| |||||||||||||    
T  38663285 gttctgtcttgtccttcattttttagcaaatcaaac 38663320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 46155085 - 46155124
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacac 49  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  46155085 gttctgtcatgtccttcattttttagcaaatcaaacacac 46155124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 32270531 - 32270569
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacaca 48  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  32270531 gttctgtcctgtccttcattttttagcaaatcaaacaca 32270569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 51264674 - 51264708
Alignment:
Q  11 ttctgtcttgtccttcattttctagcaaatcaaac 45  Q
    ||||||||||||||||||||| |||||||||||||    
T  51264674 ttctgtcttgtccttcattttttagcaaatcaaac 51264708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 45659003 - 45659044
Alignment:
Q  14 tgtcttgtccttcattttctagcaaatcaaacacacacttag 55  Q
    |||| ||||||||||||||||||||||||||| ||| |||||    
T  45659003 tgtcctgtccttcattttctagcaaatcaaacgcacccttag 45659044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 6711042 - 6711002
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacaca 50  Q
    |||||||| ||||||||||||| ||||||||||||| ||||    
T  6711042 gttctgtcctgtccttcattttttagcaaatcaaacgcaca 6711002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 18386697 - 18386736
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacac 49  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  18386697 gttctgtcctgtccttcattttttagcaaatcaaacacac 18386736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 43158608 - 43158573
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaac 45  Q
    |||||||||||||||||||||| |||||||||||||    
T  43158608 gttctgtcttgtccttcattttttagcaaatcaaac 43158573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 46633865 - 46633912
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacacacttagtc 57  Q
    |||||||| ||||||||||||| ||||||||||||| ||| |||||||    
T  46633865 gttctgtcatgtccttcattttttagcaaatcaaacgcacccttagtc 46633912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 3891964 - 3891920
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacacactta 54  Q
    |||||||| ||||||||||||| |||||||||||| |||| ||||    
T  3891964 gttctgtcctgtccttcattttttagcaaatcaaatacaccctta 3891920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 3922625 - 3922585
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaacacaca 50  Q
    |||||||| ||||||||||||| ||||||||||||| ||||    
T  3922625 gttctgtcatgtccttcattttttagcaaatcaaacgcaca 3922585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 32873695 - 32873655
Alignment:
Q  9 agttctgtcttgtccttcattttctagcaaatcaaacacac 49  Q
    |||| |||| ||||||||||||| |||||||||||||||||    
T  32873695 agttttgtcctgtccttcattttttagcaaatcaaacacac 32873655  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 40692466 - 40692501
Alignment:
Q  10 gttctgtcttgtccttcattttctagcaaatcaaac 45  Q
    |||||||||||||||||||||| |||||||||||||    
T  40692466 gttctgtcttgtccttcattttttagcaaatcaaac 40692501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 2086233 - 2086266
Alignment:
Q  12 tctgtcttgtccttcattttctagcaaatcaaac 45  Q
    |||||||||||||||||||| |||||||||||||    
T  2086233 tctgtcttgtccttcattttttagcaaatcaaac 2086266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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