View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4336-Insertion-72 (Length: 229)
Name: NF4336-Insertion-72
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-72 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5401667 - 5401439
Alignment:
| Q |
1 |
gtctccaatcaaaacgatgttgaattgaagctatcccctttaacagacgtgacccatatattctatgtctcgtggaccagcagacccacggaggctcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5401667 |
gtctccaatcaaaacgatgttgaattgaagctatcccctttaacagacgtgacccatatattctatgtctcgtggaccagcagacccacggaggctcaaa |
5401568 |
T |
|
| Q |
101 |
attgtgaggtgaatggtgccatgttgaggaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5401567 |
attgtgaggtgaatggtgccatgttgaggaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagca |
5401468 |
T |
|
| Q |
201 |
ctatgtaggaccctttgaaatcatcggta |
229 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
5401467 |
ctatgtaggacccttcgaaatcatcggta |
5401439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 5391702 - 5391525
Alignment:
| Q |
8 |
atcaaaacgatgttgaattgaagctatcccctttaacagacgtgacccatatattctatgtctcgtggaccagcagacccacggaggctcaaaattgtga |
107 |
Q |
| |
|
||||||| || |||||||||||||| || || ||||| || ||||| ||||| |||||||||||||||||||||| ||||| ||||||||||| || | |
|
|
| T |
5391702 |
atcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcaa |
5391603 |
T |
|
| Q |
108 |
ggtgaatggtgccatgttgaggaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgtctcttca |
185 |
Q |
| |
|
|| || ||| | ||||| ||||||||||||| |||||| ||||||||| ||| ||||||| |||||||| ||||| |
|
|
| T |
5391602 |
agttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtgtcccttca |
5391525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 5395499 - 5395336
Alignment:
| Q |
22 |
gaattgaagctatcccctttaacagacgtgacccatatattctatgtctcgtggaccagcagacccacggaggctcaaaattgtgaggtgaatggtgcca |
121 |
Q |
| |
|
||||||||||| || || ||||| || ||||| ||||| |||||||||||||||||||||| || || ||||||||||| || || || || ||| | | |
|
|
| T |
5395499 |
gaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcctacagaggctcaaaactgcgaagttaacggttcaa |
5395400 |
T |
|
| Q |
122 |
tgttgaggaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgtctcttca |
185 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||| ||| ||||||| ||||||||| ||||| |
|
|
| T |
5395399 |
tgttaaggaacgtccttcgagccctcatcccaaatactctcaatctttgccatgtgtcccttca |
5395336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 47349558 - 47349625
Alignment:
| Q |
148 |
atcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagcactatgtaggaccctt |
215 |
Q |
| |
|
|||||||||||||| ||||| | ||| ||||||||||| ||||||| || |||||| |||||||||| |
|
|
| T |
47349558 |
atcccaaatgctccgaatctctgccacgtgtctcttcaaactggtgggaaacactatttaggaccctt |
47349625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University