View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336-Insertion-74 (Length: 61)

Name: NF4336-Insertion-74
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336-Insertion-74
NF4336-Insertion-74
[»] chr7 (7 HSPs)
chr7 (15-61)||(5555466-5555512)
chr7 (20-61)||(8394109-8394150)
chr7 (16-61)||(14777249-14777294)
chr7 (16-61)||(3114238-3114283)
chr7 (20-61)||(36630800-36630841)
chr7 (23-61)||(26502797-26502835)
chr7 (23-61)||(26589879-26589917)
[»] chr5 (11 HSPs)
chr5 (15-61)||(39434675-39434721)
chr5 (19-61)||(13817960-13818002)
chr5 (16-58)||(36293766-36293808)
chr5 (20-61)||(1776518-1776559)
chr5 (16-61)||(26283460-26283505)
chr5 (19-61)||(10033910-10033952)
chr5 (16-61)||(3155773-3155818)
chr5 (15-48)||(16154988-16155021)
chr5 (19-61)||(14316641-14316683)
chr5 (16-46)||(16334015-16334045)
chr5 (19-61)||(26543907-26543949)
[»] chr2 (10 HSPs)
chr2 (16-61)||(42439966-42440011)
chr2 (15-61)||(41251776-41251822)
chr2 (16-61)||(2958242-2958287)
chr2 (16-61)||(6403946-6403991)
chr2 (16-57)||(17445185-17445226)
chr2 (16-61)||(32127283-32127328)
chr2 (16-61)||(35962695-35962740)
chr2 (15-61)||(18981596-18981641)
chr2 (16-61)||(16405580-16405625)
chr2 (19-61)||(34523223-34523265)
[»] chr4 (9 HSPs)
chr4 (15-61)||(20129289-20129335)
chr4 (15-61)||(25930687-25930733)
chr4 (15-61)||(26439421-26439467)
chr4 (16-61)||(13012168-13012213)
chr4 (16-61)||(34407426-34407471)
chr4 (20-61)||(36382487-36382528)
chr4 (16-61)||(47500753-47500798)
chr4 (19-61)||(27363344-27363386)
chr4 (16-61)||(43355884-43355929)
[»] chr3 (6 HSPs)
chr3 (15-61)||(39771769-39771815)
chr3 (16-61)||(22968586-22968631)
chr3 (15-59)||(19390125-19390169)
chr3 (20-58)||(34084267-34084305)
chr3 (15-58)||(6269571-6269614)
chr3 (16-61)||(6503711-6503756)
[»] scaffold0002 (1 HSPs)
scaffold0002 (16-61)||(480599-480644)
[»] chr6 (3 HSPs)
chr6 (16-61)||(398597-398642)
chr6 (13-59)||(13837798-13837844)
chr6 (16-61)||(34948900-34948945)
[»] chr1 (5 HSPs)
chr1 (16-61)||(26144235-26144280)
chr1 (16-57)||(7433425-7433466)
chr1 (16-61)||(23313218-23313263)
chr1 (23-60)||(32982199-32982236)
chr1 (19-61)||(42311083-42311125)
[»] chr8 (3 HSPs)
chr8 (15-61)||(39914494-39914540)
chr8 (20-61)||(15838270-15838311)
chr8 (19-57)||(29728532-29728570)
[»] scaffold2142 (1 HSPs)
scaffold2142 (16-61)||(502-547)
[»] scaffold0069 (1 HSPs)
scaffold0069 (16-61)||(17822-17867)
[»] scaffold0769 (1 HSPs)
scaffold0769 (19-61)||(1260-1302)


Alignment Details
Target: chr7 (Bit Score: 43; Significance: 3e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 5555466 - 5555512
Alignment:
Q  15 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  5555466 tcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggct 5555512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 8394109 - 8394150
Alignment:
Q  20 ggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  8394109 ggcggttctaccgtatggcgaccccgggcggtcgcccgggct 8394150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 14777294 - 14777249
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||    
T  14777294 catgggcggttctaccgtgtagcgatcccgggcggtcgcccgggct 14777249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 3114283 - 3114238
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||||||| ||| |||||||| ||||||||||||||    
T  3114283 catgggcggttctaccgtatggtgaccccggacggtcgcccgggct 3114238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 36630800 - 36630841
Alignment:
Q  20 ggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||| |||||||||||| ||||||||||||||    
T  36630800 ggcggttctaccgtatggcgaccccggacggtcgcccgggct 36630841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 26502797 - 26502835
Alignment:
Q  23 ggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    ||||| |||||||||||||||| ||| ||||||||||||    
T  26502797 ggttccaccgtgtggcgaccccaggcagtcgcccgggct 26502835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 26589917 - 26589879
Alignment:
Q  23 ggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    ||||| |||||||||||||||| ||| ||||||||||||    
T  26589917 ggttccaccgtgtggcgaccccaggcagtcgcccgggct 26589879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 3e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 39434675 - 39434721
Alignment:
Q  15 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  39434675 tcatgggcggttctaccgtgtggcgaccctgggcggtcgcccgggct 39434721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 13817960 - 13818002
Alignment:
Q  19 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  13817960 gggcggttctaccgtatggcgaccccgggcggtcgctcgggct 13818002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 36293808 - 36293766
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgg 58  Q
    |||||||||||||||||||||||||||||| ||||||| ||||    
T  36293808 catgggcggttctaccgtgtggcgaccccgagcggtcgtccgg 36293766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 1776559 - 1776518
Alignment:
Q  20 ggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  1776559 ggcggttctaccgtatgacgaccccgggcggtcgcccgggct 1776518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 26283505 - 26283460
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||| ||||||| |||||| ||||||||||||||||||    
T  26283505 catgggcggttccaccgtgtagcgacctcgggcggtcgcccgggct 26283460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 10033910 - 10033952
Alignment:
Q  19 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    ||||||||||||||| |||||||||||| || |||||||||||    
T  10033910 gggcggttctaccgtatggcgaccccggacgatcgcccgggct 10033952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 3155818 - 3155773
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||| ||| |||||| ||||||||||||| ||||||    
T  3155818 catgggcggttctatcgtatggcgatcccgggcggtcgctcgggct 3155773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 16154988 - 16155021
Alignment:
Q  15 tcatgggcggttctaccgtgtggcgaccccgggc 48  Q
    ||||||||||||||||||| ||||||||||||||    
T  16154988 tcatgggcggttctaccgtatggcgaccccgggc 16155021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 14316641 - 14316683
Alignment:
Q  19 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    ||||||||||||||| |||||| | ||||||||||||| ||||    
T  14316641 gggcggttctaccgtatggcgatctcgggcggtcgcccaggct 14316683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 16334045 - 16334015
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgg 46  Q
    |||||||||||||||||| ||||||||||||    
T  16334045 catgggcggttctaccgtatggcgaccccgg 16334015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 26543949 - 26543907
Alignment:
Q  19 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||| |||||   ||||||||||||||||||||||||||    
T  26543949 gggcggttttaccgcccggcgaccccgggcggtcgcccgggct 26543907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 42439966 - 42440011
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  42439966 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggct 42440011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 41251822 - 41251776
Alignment:
Q  15 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||    
T  41251822 tcatgggcggttctaccgtgtagtgaccccgggcggtcgcccgggct 41251776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 2958287 - 2958242
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||    
T  2958287 catgggcggttctaccgtatggcgaccccgggcggtcgtccgggct 2958242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 6403991 - 6403946
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||    
T  6403991 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggct 6403946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 17445226 - 17445185
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccg 57  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  17445226 catgggcggttctaccgtgtggcgacctcgggcggtcgcccg 17445185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 32127328 - 32127283
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||    
T  32127328 catgggcggttctagcgtatggcgaccccgggcggtcgcccgggct 32127283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 35962695 - 35962740
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||||||| |||||||||| |||||||| |||||||    
T  35962695 catgggcggttctaccgtatggcgaccccaggcggtcgtccgggct 35962740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 18981596 - 18981641
Alignment:
Q  15 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||    
T  18981596 tcatgggcggttctaccgtatggcga-cccgggcggtcgtccgggct 18981641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 16405580 - 16405625
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||||| | ||| ||||| |||||||||||||||||    
T  16405580 catgggcggttctaccatatggtgaccctgggcggtcgcccgggct 16405625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 34523223 - 34523265
Alignment:
Q  19 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||| |||||   ||||||||||||||||||||||||||    
T  34523223 gggcggttttaccgcccggcgaccccgggcggtcgcccgggct 34523265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.00000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 20129289 - 20129335
Alignment:
Q  15 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  20129289 tcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggct 20129335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 25930687 - 25930733
Alignment:
Q  15 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  25930687 tcatgggcggttctaccgtatggcgaccctgggcggtcgcccgggct 25930733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 26439467 - 26439421
Alignment:
Q  15 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  26439467 tcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggct 26439421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 13012168 - 13012213
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||    
T  13012168 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggct 13012213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 34407471 - 34407426
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||    
T  34407471 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggct 34407426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 36382528 - 36382487
Alignment:
Q  20 ggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  36382528 ggcggttctaccgtatggcgaccccgggcggtcgcccgggct 36382487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 47500753 - 47500798
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||    
T  47500753 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggct 47500798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 27363344 - 27363386
Alignment:
Q  19 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||| |||||| |||||||| ||||||||||||||||||    
T  27363344 gggcggttttaccgtatggcgacctcgggcggtcgcccgggct 27363386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 43355884 - 43355929
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||| ||||||| |||||||| ||| ||||||||||||    
T  43355884 catgggcggttccaccgtgtagcgaccccaggcagtcgcccgggct 43355929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.00000000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 39771769 - 39771815
Alignment:
Q  15 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  39771769 tcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggct 39771815  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 22968631 - 22968586
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||    
T  22968631 catgggcggttctaccgtgtagcgaccccgggcggtcgtccgggct 22968586  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 19390125 - 19390169
Alignment:
Q  15 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccggg 59  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||    
T  19390125 tcatgggaggttctaccgtgtggcgaccccgggcggtcgtccggg 19390169  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 34084305 - 34084267
Alignment:
Q  20 ggcggttctaccgtgtggcgaccccgggcggtcgcccgg 58  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  34084305 ggcggttctaccgtatggcgaccccgggcggtcgcccgg 34084267  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 6269614 - 6269571
Alignment:
Q  15 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgg 58  Q
    ||||||||||||||||||||| |||| |||||||||||| ||||    
T  6269614 tcatgggcggttctaccgtgtagcgatcccgggcggtcgtccgg 6269571  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 6503756 - 6503711
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||  |||||  ||||||||||||||||||||||||||    
T  6503756 catgggcggtttcaccgtccggcgaccccgggcggtcgcccgggct 6503711  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 480644 - 480599
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||    
T  480644 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggct 480599  T

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Target: chr6 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 398597 - 398642
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||    
T  398597 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggct 398642  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 13837798 - 13837844
Alignment:
Q  13 tctcatgggcggttctaccgtgtggcgaccccgggcggtcgcccggg 59  Q
    ||||||||||||||||||||| ||||||||||||||| |||| ||||    
T  13837798 tctcatgggcggttctaccgtatggcgaccccgggcgatcgctcggg 13837844  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 34948945 - 34948900
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||||||| |||||||||| ||||||||||| ||||    
T  34948945 catgggcggttctaccgtatggcgaccccaggcggtcgcccaggct 34948900  T

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Target: chr1 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 26144235 - 26144280
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||    
T  26144235 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggct 26144280  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 7433425 - 7433466
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccg 57  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  7433425 catgggcggttctaccgtatggcaaccccgggcggtcgcccg 7433466  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 23313218 - 23313263
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||||||| |||||| | |||||||| |||||||||    
T  23313218 catgggcggttctaccgtatggcgatctcgggcggttgcccgggct 23313263  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 32982236 - 32982199
Alignment:
Q  23 ggttctaccgtgtggcgaccccgggcggtcgcccgggc 60  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  32982236 ggttctaccgtatggcgaccccgggcggtcgcgcgggc 32982199  T

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Target: chr1; HSP #5
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 42311125 - 42311083
Alignment:
Q  19 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    ||||||||||||||| |||||||||| | || |||||||||||    
T  42311125 gggcggttctaccgtatggcgaccccagacgatcgcccgggct 42311083  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 39914494 - 39914540
Alignment:
Q  15 tcatgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||||    
T  39914494 tcatggacggttccaccgtgtagcgaccccgggcggtcgcccgggct 39914540  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 15838270 - 15838311
Alignment:
Q  20 ggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  15838270 ggcggttctaccgtatggcgaccccgggcggtcacccgggct 15838311  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 29728570 - 29728532
Alignment:
Q  19 gggcggttctaccgtgtggcgaccccgggcggtcgcccg 57  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  29728570 gggcggttctaccgtatggcgaccccggacggtcgcccg 29728532  T

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Target: scaffold2142 (Bit Score: 34; Significance: 0.00000000007; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 502 - 547
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||| ||||||| |||| ||||||||||||||||||||    
T  502 catgggcggttccaccgtgtagcgatcccgggcggtcgcccgggct 547  T

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Target: scaffold0069 (Bit Score: 34; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 17822 - 17867
Alignment:
Q  16 catgggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||    
T  17822 catgggcggttctaccgtgtggcgaccccgagcgatcgtccgggct 17867  T

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Target: scaffold0769 (Bit Score: 27; Significance: 0.000001; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 27; E-Value: 0.000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 1260 - 1302
Alignment:
Q  19 gggcggttctaccgtgtggcgaccccgggcggtcgcccgggct 61  Q
    |||||||| |||||   ||||||||||||||||||||||||||    
T  1260 gggcggttttaccgcccggcgaccccgggcggtcgcccgggct 1302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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