View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-75 (Length: 188)
Name: NF4336-Insertion-75
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-75 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 4 - 188
Target Start/End: Complemental strand, 13283116 - 13282932
Alignment:
| Q |
4 |
gaaacatcgagtataaaactctagtgaagaataaaatactgacataacgactaatatactaacatttgtatctataaaaatattaatgatgtatatcgca |
103 |
Q |
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| T |
13283116 |
gaaacatcgagtataaaactctagtgaagaacaaaatagtgacataacgactaatatactaacatttgtatctataaaaatattaatgatgtatatcgca |
13283017 |
T |
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| Q |
104 |
cctaacatcttggcacacatgggaaaggcgtctaggttcatcatcaagatgacaaccctcatcaaaattctgtgagtagctaata |
188 |
Q |
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| T |
13283016 |
cctaacatcttggcacacatgggaaaggcgtcttggttcatcatcaagatgacaaccctcatcaaaattctgtgagtagctaata |
13282932 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 26533843 - 26533892
Alignment:
| Q |
36 |
aaaatactgacataacgactaatatactaacatttgtatctataaaaata |
85 |
Q |
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| T |
26533843 |
aaaatactaacataacaactaatatactaacatttggatataaaaaaata |
26533892 |
T |
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