View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-76 (Length: 192)
Name: NF4336-Insertion-76
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-76 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 4331391 - 4331582
Alignment:
| Q |
1 |
ggattagtcccatgaaaccactataactaaggtcaaggtaagttaacctctccatagagccaaaaaagcttggtattttagtatggacaaagtaatttaa |
100 |
Q |
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| T |
4331391 |
ggattagtcccatgaaaccactataactaaggtcaaggtaagttaacctctccatagagccaaaaaagcttggtattttagtatggacaaagtaatttaa |
4331490 |
T |
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| Q |
101 |
gctcaagtccaaacgaatcaaatattttagttctaacaaggaaggactaatctcaccactcaattccacgtgttcaaagtcaagaggtgtaa |
192 |
Q |
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| T |
4331491 |
gctcaagtccaaacgaatcaaatattttagttctaacaaggaaggactaatctcaccactcaattccatgtattcaaagtcaagaggtgtaa |
4331582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 7 - 190
Target Start/End: Complemental strand, 4496566 - 4496381
Alignment:
| Q |
7 |
gtcccatgaaaccactataactaaggtcaaggtaag--ttaacctctccatagagccaaaaaagcttggtattttagtatggacaaagtaatttaagctc |
104 |
Q |
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| T |
4496566 |
gtcccatgaaaccacttaaactaaggtctaggtaataattaacctctccatagagccaaaaaagcttggtattttagtatggacaaagtaatttaagctc |
4496467 |
T |
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| Q |
105 |
aagtccaaacgaatcaaatattttagttctaacaaggaaggactaatctcaccactcaattccacgtgttcaaagtcaagaggtgt |
190 |
Q |
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| T |
4496466 |
aagtccaaatcaatcaaacattttagttctaacaaggaaggactaatctcaccactcaattgcatgtatggagagtcaagaggtgt |
4496381 |
T |
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