View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-78 (Length: 197)
Name: NF4336-Insertion-78
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-78 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 28791125 - 28791316
Alignment:
| Q |
6 |
cctgttatattacagaaatgcagttagaagaacatatatgacattaacttcagtatgatgcttatgcataggataagtttgatacataataaaatggtca |
105 |
Q |
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| T |
28791125 |
cctgttatattacagaaatgcagttggcagaacatatatgacattaacttcagtatgatgcttatgcataggataagtttgatacataataaaatggtca |
28791224 |
T |
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| Q |
106 |
taaatatgaaaatataaacgggcagatgaatataagagaaaagatatgaccatgatgtgcatagacgtaagcctgcctccaagagtagatgt |
197 |
Q |
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| T |
28791225 |
taaatatgaaaatataaatgggcagatgaatataagagaaaagatatgaccatgatgtgcatagacgtaagcctgcctccaagagtagatgt |
28791316 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 28784259 - 28784327
Alignment:
| Q |
129 |
agatgaatataagagaaaagatatgaccatgatgtgcatagacgtaagcctgcctccaagagtagatgt |
197 |
Q |
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| T |
28784259 |
agatgaataaaagagagaagagatgaccatgatgagcatagatgtaagcctgcctccaagagtagatgt |
28784327 |
T |
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