View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336-Insertion-8 (Length: 91)

Name: NF4336-Insertion-8
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336-Insertion-8
NF4336-Insertion-8
[»] chr8 (3 HSPs)
chr8 (1-91)||(38121627-38121716)
chr8 (1-91)||(38608407-38608496)
chr8 (1-91)||(38793190-38793279)
[»] chr4 (1 HSPs)
chr4 (1-89)||(28731203-28731290)
[»] chr1 (2 HSPs)
chr1 (1-43)||(31529202-31529244)
chr1 (5-43)||(51801270-51801308)
[»] chr7 (1 HSPs)
chr7 (1-40)||(34875976-34876015)


Alignment Details
Target: chr8 (Bit Score: 73; Significance: 6e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 6e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 38121716 - 38121627
Alignment:
Q  1 taaccgtcacttccgagtcgattcatccgaacaanacttccggcagtgctccnaaagtacttcatcggaggcgttgagattactcaaccgg 91  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  38121716 taaccgtcacttccgagtcgattcatcagaacaacacttccggcagtgctccaaaagt-cttcatcggaggcgttgagattactcaaccgg 38121627  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 38608407 - 38608496
Alignment:
Q  1 taaccgtcacttccgagtcgattcatccgaacaanacttccggcagtgctccnaaagtacttcatcggaggcgttgagattactcaaccgg 91  Q
    |||||||||||||||| ||||||||| ||||||  ||| ||||| ||||||| |||||  ||||||||||||||||||||| |||||||||    
T  38608407 taaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagt-tttcatcggaggcgttgagattgctcaaccgg 38608496  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 38793190 - 38793279
Alignment:
Q  1 taaccgtcacttccgagtcgattcatccgaacaanacttccggcagtgctccnaaagtacttcatcggaggcgttgagattactcaaccgg 91  Q
    |||||||||||||||| ||||||||| ||||||  ||| ||||| ||||||| |||||  ||||||||||||||||||||| |||||||||    
T  38793190 taaccgtcacttccgattcgattcattcgaacattactaccggcggtgctccaaaagt-tttcatcggaggcgttgagattgctcaaccgg 38793279  T

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Target: chr4 (Bit Score: 63; Significance: 5e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 28731290 - 28731203
Alignment:
Q  1 taaccgtcacttccgagtcgattcatccgaacaanacttccggcagtgctccnaaagtacttcatcggaggcgttgagattactcaacc 89  Q
    |||| ||||||||||||||||||||||||||||  ||||||||| ||||||| |||||| |||||||||||||||||||||||||||||    
T  28731290 taactgtcacttccgagtcgattcatccgaacagcacttccggcggtgctccaaaagta-ttcatcggaggcgttgagattactcaacc 28731203  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31529244 - 31529202
Alignment:
Q  1 taaccgtcacttccgagtcgattcatccgaacaanacttccgg 43  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  31529244 taaccgtcacttccgagtcgattcatccgaacaacacttccgg 31529202  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 51801308 - 51801270
Alignment:
Q  5 cgtcacttccgagtcgattcatccgaacaanacttccgg 43  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  51801308 cgtcacttccgattcgattcatccgaacaacacttccgg 51801270  T

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Target: chr7 (Bit Score: 33; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34875976 - 34876015
Alignment:
Q  1 taaccgtcacttccgagtcgattcatccgaacaanacttc 40  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  34875976 taaccatcacttccgagtcgattcatccgaacaacacttc 34876015  T

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