View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-82 (Length: 120)
Name: NF4336-Insertion-82
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-82 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 7e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 7e-62
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 2193528 - 2193647
Alignment:
| Q |
1 |
aaggattcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatagagttataaaaatcgattttaccatgaaaaaactcttatcataatcc |
100 |
Q |
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| T |
2193528 |
aaggattcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatagagttataaaaatcgattttaccatgaaaaaactcttatcataatcc |
2193627 |
T |
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| Q |
101 |
agaaattcaacatcaactta |
120 |
Q |
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| T |
2193628 |
agaaattcaacatcaactta |
2193647 |
T |
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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 258549 - 258496
Alignment:
| Q |
1 |
aaggattcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatag |
54 |
Q |
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| T |
258549 |
aaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatag |
258496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14174515 - 14174568
Alignment:
| Q |
1 |
aaggattcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatag |
54 |
Q |
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| T |
14174515 |
aaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatag |
14174568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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