View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336-Insertion-83 (Length: 134)

Name: NF4336-Insertion-83
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336-Insertion-83
NF4336-Insertion-83
[»] chr3 (5 HSPs)
chr3 (4-109)||(254677-254782)
chr3 (7-98)||(13640502-13640593)
chr3 (7-78)||(7872496-7872567)
chr3 (4-79)||(27546536-27546613)
chr3 (4-60)||(13923000-13923056)
[»] chr1 (5 HSPs)
chr1 (7-98)||(36689584-36689675)
chr1 (7-98)||(36705684-36705775)
chr1 (38-98)||(19053496-19053556)
chr1 (13-98)||(40277408-40277493)
chr1 (38-98)||(28200020-28200080)
[»] chr5 (2 HSPs)
chr5 (4-100)||(16631481-16631579)
chr5 (4-60)||(31107372-31107428)
[»] chr6 (1 HSPs)
chr6 (14-100)||(17273374-17273462)
[»] scaffold0020 (1 HSPs)
scaffold0020 (16-100)||(109873-109959)
[»] chr4 (2 HSPs)
chr4 (7-79)||(13996445-13996517)
chr4 (4-75)||(17351420-17351491)
[»] chr2 (1 HSPs)
chr2 (36-100)||(17828467-17828531)
[»] chr8 (2 HSPs)
chr8 (4-50)||(8506831-8506877)
chr8 (4-57)||(10735976-10736029)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 5e-51; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 254782 - 254677
Alignment:
Q  4 aacaatatcaagaaaattttgaacaataaattacatttgtgattgaacgtaagagtagttattgattgaaatgatggagcctcacatgataaattgagga 103  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  254782 aacaatatcaagaaaattttgaacaataaatcacatttgtgattgaacgtaagagtagttattgattgaaatgatggagcctcacatgataaattgagga 254683  T
Q  104 caaagg 109  Q
    ||||||    
T  254682 caaagg 254677  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 13640502 - 13640593
Alignment:
Q  7 aatatcaagaaaattttgaacaataaattacatttgtgattgaacgtaagagtagttattgattgaaatgatggagcctcacatgataaatt 98  Q
    ||||||||||||||||||||  |||||| |||||||||||||||| |||||||||| ||||||||||  |||| || |||||||||||||||    
T  13640502 aatatcaagaaaattttgaaagataaatcacatttgtgattgaacataagagtagtcattgattgaatagatgaagtctcacatgataaatt 13640593  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 7872567 - 7872496
Alignment:
Q  7 aatatcaagaaaattttgaacaataaattacatttgtgattgaacgtaagagtagttattgattgaaatgat 78  Q
    ||||||||||||||||||||  |||||| |||||||||||||||| |||||||||| |||||||||||||||    
T  7872567 aatatcaagaaaattttgaaagataaatcacatttgtgattgaacataagagtagtcattgattgaaatgat 7872496  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 27546536 - 27546613
Alignment:
Q  4 aacaatatcaagaaaattttgaacaataaattacatttgtgattgaacgtaagagt--agttattgattgaaatgatg 79  Q
    |||||||||||||| ||||||||| |||| | ||||||||||||||||||||||||  | | ||||||||||||||||    
T  27546536 aacaatatcaagaacattttgaacgataagtcacatttgtgattgaacgtaagagtacaatcattgattgaaatgatg 27546613  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 13923000 - 13923056
Alignment:
Q  4 aacaatatcaagaaaattttgaacaataaattacatttgtgattgaacgtaagagta 60  Q
    |||||||||||| ||||||||  | |||||| ||| ||||||||||||||| |||||    
T  13923000 aacaatatcaaggaaattttggccgataaatcacacttgtgattgaacgtatgagta 13923056  T

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Target: chr1 (Bit Score: 52; Significance: 3e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 36689584 - 36689675
Alignment:
Q  7 aatatcaagaaaattttgaacaataaattacatttgtgattgaacgtaagagtagttattgattgaaatgatggagcctcacatgataaatt 98  Q
    ||||||||||||| ||||||  |||||| |||||||||||||||| |||||||||| ||||||||||| |||| || ||| |||||||||||    
T  36689584 aatatcaagaaaactttgaaagataaatcacatttgtgattgaacataagagtagtcattgattgaaaagatgaagtctcgcatgataaatt 36689675  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 36705684 - 36705775
Alignment:
Q  7 aatatcaagaaaattttgaacaataaattacatttgtgattgaacgtaagagtagttattgattgaaatgatggagcctcacatgataaatt 98  Q
    ||||||||||||| ||||||  |||||| |||||||||||||||| |||||||||| ||||||||||| |||| || ||| |||||||||||    
T  36705684 aatatcaagaaaactttgaaagataaatcacatttgtgattgaacataagagtagtcattgattgaaaagatgaagtctcgcatgataaatt 36705775  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 19053556 - 19053496
Alignment:
Q  38 atttgtgattgaacgtaagagtagttattgattgaaatgatggagcctcacatgataaatt 98  Q
    |||||| ||||||| ||||||||||||||||||| ||||| | | ||||||||||||||||    
T  19053556 atttgtaattgaacataagagtagttattgattgtaatgaagaaacctcacatgataaatt 19053496  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 40277493 - 40277408
Alignment:
Q  13 aagaaaattttgaacaataaattacatttgtgattgaacgtaagagtagttattgattgaaatgatggagcctcacatgataaatt 98  Q
    ||||||||||||||  |||||  | |||||||||||||  | |||||| | |||||||||||||||| || | |||||||||||||    
T  40277493 aagaaaattttgaaagataaaacaaatttgtgattgaatattagagtattcattgattgaaatgatgaagtcgcacatgataaatt 40277408  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 28200080 - 28200020
Alignment:
Q  38 atttgtgattgaacgtaagagtagttattgattgaaatgatggagcctcacatgataaatt 98  Q
    |||| ||||||||| ||||||||||||||||||| |||| || |  |||||||||||||||    
T  28200080 atttatgattgaacataagagtagttattgattgtaatgttgaaatctcacatgataaatt 28200020  T

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Target: chr5 (Bit Score: 48; Significance: 8e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 16631579 - 16631481
Alignment:
Q  4 aacaatatcaagaaaattttgaacaataaattacatttgtgattgaacgtaagagt--agttattgattgaaatgatggagcctcacatgataaattga 100  Q
    |||||| ||| ||||| ||||||| |||||| |||| |||||||||||||||||||  | | |||||||||||||||| || |||||||||||||||||    
T  16631579 aacaatgtcatgaaaactttgaacgataaatcacatatgtgattgaacgtaagagtacaatcattgattgaaatgatgtagtctcacatgataaattga 16631481  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 31107428 - 31107372
Alignment:
Q  4 aacaatatcaagaaaattttgaacaataaattacatttgtgattgaacgtaagagta 60  Q
    |||||||||||| ||||||||  | |||||| |||||||||||||||| ||||||||    
T  31107428 aacaatatcaaggaaattttggccgataaatcacatttgtgattgaacataagagta 31107372  T

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Target: chr6 (Bit Score: 46; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 17273462 - 17273374
Alignment:
Q  14 agaaaattttgaacaataaattacatttgtgattgaacgtaagagt--agttattgattgaaatgatggagcctcacatgataaattga 100  Q
    |||||||||||||  |||||| ||||||| ||||||||||||||||  | | |||||||||||||||| || |||||||||||||||||    
T  17273462 agaaaattttgaatgataaatcacatttgcgattgaacgtaagagtacactcattgattgaaatgatgaagtctcacatgataaattga 17273374  T

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Target: scaffold0020 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 109873 - 109959
Alignment:
Q  16 aaaattttgaacaataaattacatttgtgattgaacgtaagagt--agttattgattgaaatgatggagcctcacatgataaattga 100  Q
    ||||| ||||||  ||||| ||||||||||||||||||||||||  | | |||||||||||| ||| || |||||||||||||||||    
T  109873 aaaatattgaacggtaaatcacatttgtgattgaacgtaagagtacaatcattgattgaaataatgaagtctcacatgataaattga 109959  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 13996445 - 13996517
Alignment:
Q  7 aatatcaagaaaattttgaacaataaattacatttgtgattgaacgtaagagtagttattgattgaaatgatg 79  Q
    ||||||||||||||||| ||   ||||| |||||||||||||||| |||||||| | ||||||||||| ||||    
T  13996445 aatatcaagaaaattttaaaaggtaaatcacatttgtgattgaacataagagtaatcattgattgaaacgatg 13996517  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 17351420 - 17351491
Alignment:
Q  4 aacaatatcaagaaaattttgaacaataaattacatttgtgattgaacgtaagagtagttattgattgaaat 75  Q
    |||||||||||||||||  | ||  |||||| |||||||||||||||| ||||||| || ||||||||||||    
T  17351420 aacaatatcaagaaaatcataaaagataaatcacatttgtgattgaacataagagtggtcattgattgaaat 17351491  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 17828531 - 17828467
Alignment:
Q  36 acatttgtgattgaacgtaagagtagttattgattgaaatgatggagcctcacatgataaattga 100  Q
    |||||||||||||||| |||||||||| ||||||||||| ||   || |||||||||||||||||    
T  17828531 acatttgtgattgaacataagagtagtcattgattgaaaagaaaaagtctcacatgataaattga 17828467  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 8506831 - 8506877
Alignment:
Q  4 aacaatatcaagaaaattttgaacaataaattacatttgtgattgaa 50  Q
    ||||||||||||||||||||| || |||||| |||||||||||||||    
T  8506831 aacaatatcaagaaaattttggacgataaatcacatttgtgattgaa 8506877  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 10735976 - 10736029
Alignment:
Q  4 aacaatatcaagaaaattttgaacaataaattacatttgtgattgaacgtaaga 57  Q
    |||||||||||||||||||||  | |||||| ||||||||||| ||||||||||    
T  10735976 aacaatatcaagaaaattttggccgataaatcacatttgtgatcgaacgtaaga 10736029  T

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