View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336-Insertion-92 (Length: 183)

Name: NF4336-Insertion-92
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336-Insertion-92
NF4336-Insertion-92
[»] chr4 (6 HSPs)
chr4 (1-183)||(1327263-1327445)
chr4 (1-183)||(44186110-44186292)
chr4 (1-164)||(4877802-4877965)
chr4 (133-182)||(1328887-1328936)
chr4 (151-183)||(44187569-44187601)
chr4 (41-101)||(48741953-48742013)
[»] chr7 (2 HSPs)
chr7 (1-181)||(6432597-6432777)
chr7 (5-64)||(25628199-25628258)
[»] chr8 (2 HSPs)
chr8 (3-180)||(26532349-26532526)
chr8 (27-62)||(4027932-4027967)
[»] scaffold0831 (1 HSPs)
scaffold0831 (4-183)||(1205-1384)
[»] chr5 (5 HSPs)
chr5 (40-75)||(42411862-42411897)
chr5 (40-72)||(39724568-39724600)
chr5 (5-60)||(30651574-30651629)
chr5 (5-60)||(31777920-31777975)
chr5 (40-75)||(42414805-42414840)
[»] chr2 (1 HSPs)
chr2 (27-62)||(29352446-29352481)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 8e-63; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 1327263 - 1327445
Alignment:
Q  1 ttcttttcacatatatgttttgggcaaacttggtgttagagaatcatggactaaactcttcattgtcggacccttccctagcttggagcgtcctattgga 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||    
T  1327263 ttcttttcacatatatgttttgggcgaacttggtgttagagaatcatggactaaactcttcattgtcggacccttgcctggcgtggagcgtcctattgga 1327362  T
Q  101 gtaggnnnnnnnggtgatatattcttcataaaaaatgacgatgaagtagcctgttttgatttaaatacccaaacaattgaaga 183  Q
    | |||       || |||||||||||  ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  1327363 gcaggaaaaaaaggcgatatattctttctaaaaaatgacaatgaagtagcttgttttgatttaaatacccaaacaattgaaga 1327445  T

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Target: chr4; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 44186110 - 44186292
Alignment:
Q  1 ttcttttcacatatatgttttgggcaaacttggtgttagagaatcatggactaaactcttcattgtcggacccttccctagcttggagcgtcctattgga 100  Q
    ||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| ||||| |||||    
T  44186110 ttcttttcacatatatgttttgggagaatttggtgttagagaatcatggactaaactctttattgtcggacccttgcctagcgtggagtgtcctgttgga 44186209  T
Q  101 gtaggnnnnnnnggtgatatattcttcataaaaaatgacgatgaagtagcctgttttgatttaaatacccaaacaattgaaga 183  Q
    | |||       | |||||||||||| |||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||    
T  44186210 gaaggaaaaaaagttgatatattctttataaaaaatgacaatgaaatagcttgttttgatttaaatactcaaacaattgaaga 44186292  T

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Target: chr4; HSP #3
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 4877802 - 4877965
Alignment:
Q  1 ttcttttcacatatatgttttgggcaaacttggtgttagagaatcatggactaaactcttcattgtcggacccttccctagcttggagcgtcctattgga 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| ||||||||||| |||||    
T  4877802 ttcttttcacatatatgttttgggcgaacttggtgttagagaatcatggactaaactctttattatcggacccttgcctagcgtggagcgtcctgttgga 4877901  T
Q  101 gtaggnnnnnnnggtgatatattcttcataaaaaatgacgatgaagtagcctgttttgatttaa 164  Q
    | |||       |||||||||||||| |||||||||||| ||||| |||| |||||||||||||    
T  4877902 gcaggaaaaaaaggtgatatattctttataaaaaatgacaatgaaatagcttgttttgatttaa 4877965  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 1328887 - 1328936
Alignment:
Q  133 aaatgacgatgaagtagcctgttttgatttaaatacccaaacaattgaag 182  Q
    ||||||| ||| | ||||||||||||||||||||||||||| ||||||||    
T  1328887 aaatgacaatggattagcctgttttgatttaaatacccaaataattgaag 1328936  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 44187569 - 44187601
Alignment:
Q  151 ctgttttgatttaaatacccaaacaattgaaga 183  Q
    |||||||||||||||| ||||||||||||||||    
T  44187569 ctgttttgatttaaatgcccaaacaattgaaga 44187601  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 48742013 - 48741953
Alignment:
Q  41 gaatcatggactaaactcttcattgtcggacccttccctagcttggagcgtcctattggag 101  Q
    ||||| |||||||||||||||||| | |||||||| |||||| | || | |||||||||||    
T  48742013 gaatcttggactaaactcttcatttttggacccttacctagcattgaacatcctattggag 48741953  T

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Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 6432597 - 6432777
Alignment:
Q  1 ttcttttcacatatatgttttgggcaaacttggtgttagagaatcatggactaaactcttcattgtcggacccttccctagcttggagcgtcctattgga 100  Q
    |||||||||||||||||||||| |  |||||||||| | |||||||||||| ||||||||||||||||||||||| |||||| | |  ||||||||||||    
T  6432597 ttcttttcacatatatgttttgtgtgaacttggtgtcaaagaatcatggaccaaactcttcattgtcggacccttacctagcgtaggtcgtcctattgga 6432696  T
Q  101 gtaggnnnnnnnggtgatatattct-tcataaaaaatgacgatgaagtagcctgttttgatttaaatacccaaacaattgaa 181  Q
     ||||       |||||| |||||| || ||| || || | | ||| ||| ||||||||||||||| |||||||||||||||    
T  6432697 ataggaaagaagggtgatctattctgtcttaagaattg-caaagaactagtctgttttgatttaaacacccaaacaattgaa 6432777  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 25628199 - 25628258
Alignment:
Q  5 tttcacatatatgttttgggcaaacttggtgttagagaatcatggactaaactcttcatt 64  Q
    ||||||||||  ||||| ||  |||||||||| || ||||||||||||||||||||||||    
T  25628199 tttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactcttcatt 25628258  T

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Target: chr8 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 26532349 - 26532526
Alignment:
Q  3 cttttcacatatatgttttgggcaaacttggtgttagagaatcatggactaaactcttcattgtcggacccttccctagcttggagcgtcctattggagt 102  Q
    ||||||||||||||||||||||  ||| ||||  ||||||||||||||||||||||||||| ||||||||||| ||||   |   ||||||| ||||||     
T  26532349 cttttcacatatatgttttgggtgaacctggtcatagagaatcatggactaaactcttcatagtcggacccttgcctaatgtttggcgtcctcttggagc 26532448  T
Q  103 aggnnnnnnnggtgatatattcttcataaaaaatgacgatgaagtagcctgttttgatttaaatacccaaacaattga 180  Q
    |||       |||||| |||||||| | ||| |||| |||| | || | |||||||||||||||||||||| ||||||    
T  26532449 aggaaaaaaaggtgatctattcttcgttaaagatgatgatggactaacttgttttgatttaaatacccaaagaattga 26532526  T

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Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 4027932 - 4027967
Alignment:
Q  27 aacttggtgttagagaatcatggactaaactcttca 62  Q
    |||||||||| || ||||||||||||||||||||||    
T  4027932 aacttggtgtgagtgaatcatggactaaactcttca 4027967  T

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Target: scaffold0831 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 1384 - 1205
Alignment:
Q  4 ttttcacatatatgttttgggcaaacttggtgttagagaatcatggactaaactcttcattgtcggacccttccctagcttggagcgtcctattggagta 103  Q
    |||||||||||||||||||||  ||| ||| ||||| ||||| ||||| |||||||||||||| || || || |||||  | ||||||||||| || |||    
T  1384 ttttcacatatatgttttgggtgaacctggcgttagtgaatcgtggacaaaactcttcattgttggccctttgcctagtgttgagcgtcctataggcgta 1285  T
Q  104 ggnnnnnnnggtgatatattcttcataaaaaatgacgatgaagtagcctgttttgatttaaatacccaaacaattgaaga 183  Q
     |       ||||||||||| || || | ||| ||  ||||| | || |||||||| |||| ||||||||||||||||||    
T  1284 cgaaagaatggtgatatattgttgattagaaacgagaatgaattggcttgttttgacttaattacccaaacaattgaaga 1205  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 42411862 - 42411897
Alignment:
Q  40 agaatcatggactaaactcttcattgtcggaccctt 75  Q
    |||||||||||||||||||||||||||||| |||||    
T  42411862 agaatcatggactaaactcttcattgtcgggccctt 42411897  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 39724600 - 39724568
Alignment:
Q  40 agaatcatggactaaactcttcattgtcggacc 72  Q
    ||||||||||||||||||||||||||| |||||    
T  39724600 agaatcatggactaaactcttcattgttggacc 39724568  T

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Target: chr5; HSP #3
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 30651574 - 30651629
Alignment:
Q  5 tttcacatatatgttttgggcaaacttggtgttagagaatcatggactaaactctt 60  Q
    ||||||||||  ||||| ||  |||||||||| || ||||||||||||||||||||    
T  30651574 tttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactctt 30651629  T

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Target: chr5; HSP #4
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 31777920 - 31777975
Alignment:
Q  5 tttcacatatatgttttgggcaaacttggtgttagagaatcatggactaaactctt 60  Q
    ||||||||||  ||||| ||  |||||||||| || ||||||||||||||||||||    
T  31777920 tttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactctt 31777975  T

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Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 42414805 - 42414840
Alignment:
Q  40 agaatcatggactaaactcttcattgtcggaccctt 75  Q
    ||||||||||||||||||||||||| |||| |||||    
T  42414805 agaatcatggactaaactcttcattatcgggccctt 42414840  T

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Target: chr2 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 29352481 - 29352446
Alignment:
Q  27 aacttggtgttagagaatcatggactaaactcttca 62  Q
    |||||||||| || ||||||||||||||||||||||    
T  29352481 aacttggtgtgagtgaatcatggactaaactcttca 29352446  T

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