View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-93 (Length: 197)
Name: NF4336-Insertion-93
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-93 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 38013712 - 38013908
Alignment:
| Q |
1 |
agatttacgaggtaagaaagaaactgtccaccagttatcataagcacatttgtgctaaccaacgaaccccttatttctgatggtgaggattctgcaatat |
100 |
Q |
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| T |
38013712 |
agatttacgaggtaagaaagaaactgtccaccagttatcataagcacatttgtgctaaccaacgaaccccttatttctgatggtgaggattctgcaatat |
38013811 |
T |
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| Q |
101 |
atacaggagccgtgacagaggctacgcccacaccaatgccaacaagaagacggccaagtatgagaacatatgcatctggtgcggcagccataacaac |
197 |
Q |
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| T |
38013812 |
atacaggagccgtgacagaggctacacccacaccaatgccaacaagaagacggccaagtatgagaacatatgcatctggcgcggaagccataacaac |
38013908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 27008624 - 27008429
Alignment:
| Q |
1 |
agatttacgaggtaagaaagaaactgtccaccagttatcataagcacatttgtgctaaccaacgaaccccttatttctgatggtgaggattctgcaatat |
100 |
Q |
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| T |
27008624 |
agatttacgag-tgagaaagaaactatccaccagctatcataaacacatttgtgctaactaatgaaccccttatttatgattgtgcgcattctatgatat |
27008526 |
T |
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| Q |
101 |
atacaggagccgtgacagaggctacgcccacaccaatgccaacaagaagacggccaagtatgagaacatatgcatctggtgcggcagccataacaac |
197 |
Q |
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| T |
27008525 |
atacaggagcagtgacagaagttacacccacaccaatgccaacaagaagacggccaagtatgagaatatatgcatctggcgcggcagtcataacaac |
27008429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 52768751 - 52768946
Alignment:
| Q |
1 |
agatttacgaggtaagaaagaaactgtccaccagttatcataagcacatttgtgctaaccaacgaaccccttatttctgatggtgaggattctgcaatat |
100 |
Q |
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| T |
52768751 |
agatttactagataagaaataaactgtccaccagttatcataagcacgtttgtggctacaagtcctccccttatttctgatggtgacaattctgcaatat |
52768850 |
T |
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| Q |
101 |
atacaggagccgtgacagaggctacgcccacaccaatgccaacaagaagacggccaagtatgagaacatatgcatctggtgcggcagccataacaa |
196 |
Q |
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| T |
52768851 |
acacgggagcagtaactgaagctatacccacgcccaaaccaaccaaaacacggccaagtatgagaatataaggatctggcgcagcagccatgacaa |
52768946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 390346 - 390171
Alignment:
| Q |
16 |
gaaagaaactgtccaccagttatcataagcacatttgtgctaaccaacgaaccccttatttctgatggtgaggattctgcaatatatacaggagccgtga |
115 |
Q |
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| T |
390346 |
gaaacaaactgtccaccggtgatcatgaggacattagtgctgactaatgagcctctgatttcagagggtgcgacttctgcaatgtagacaggagcagtaa |
390247 |
T |
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| Q |
116 |
cagaggctacgcccacaccaatgccaacaagaagacggccaagtatgagaacatatgcatctggtgcggcagccat |
191 |
Q |
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| T |
390246 |
cagaagctatgccaacacccaaaccaacgagaagacgtcctgctatgagaacataaggatcaggtgcagcagccat |
390171 |
T |
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