View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336-Insertion-95 (Length: 91)

Name: NF4336-Insertion-95
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336-Insertion-95
NF4336-Insertion-95
[»] chr1 (8 HSPs)
chr1 (1-87)||(9072131-9072217)
chr1 (1-83)||(8863980-8864062)
chr1 (25-90)||(9065617-9065682)
chr1 (22-80)||(8972335-8972393)
chr1 (12-83)||(8868216-8868287)
chr1 (1-56)||(9007354-9007409)
chr1 (28-83)||(9099662-9099717)
chr1 (28-87)||(9136338-9136397)


Alignment Details
Target: chr1 (Bit Score: 63; Significance: 5e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 9072217 - 9072131
Alignment:
Q  1 gattgcacaagatatttccccgaatacaaatataaagttgtcacattattttcacaagatagttcatacctgctgtctccgcagtgt 87  Q
    |||||||||  |||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  9072217 gattgcacataatattttcccgaatacaaatataaagttgccacattattttcacaagatagttcgtacctgctttctccgcagtgt 9072131  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 8864062 - 8863980
Alignment:
Q  1 gattgcacaagatatttccccgaatacaaatataaagttgtcacattattttcacaagatagttcatacctgctgtctccgca 83  Q
    ||||||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| |||||    
T  8864062 gattgcacatgatattttcccgaatacaaatataaagttgtaacattatttgcacaagatagctcatacctgctgtccccgca 8863980  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 9065617 - 9065682
Alignment:
Q  25 tacaaatataaagttgtcacattattttcacaagatagttcatacctgctgtctccgcagtgtatt 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||    
T  9065617 tacaaatataaagttgtcacattattttcacaagatagttcatacttgctgttaccgcagtgtatt 9065682  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 8972335 - 8972393
Alignment:
Q  22 gaatacaaatataaagttgtcacattattttcacaagatagttcatacctgctgtctcc 80  Q
    ||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  8972335 gaatataaatataaagttgtgacattattttcacaagctagttcatacctgctgtctcc 8972393  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 8868287 - 8868216
Alignment:
Q  12 atatttccccgaatacaaatataaagttgtcacattattttcacaagatagttcatacctgctgtctccgca 83  Q
    |||||| || |||||||||| ||| |||||||| ||||||||||||||||||||||||||||| || |||||    
T  8868287 atattttccggaatacaaatttaaggttgtcacgttattttcacaagatagttcatacctgctatccccgca 8868216  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 9007354 - 9007409
Alignment:
Q  1 gattgcacaagatatttccccgaatacaaatataaagttgtcacattattttcaca 56  Q
    ||||||||| ||||||| || |||||||||| ||||||||||||||||||||||||    
T  9007354 gattgcacatgatattttcctgaatacaaatttaaagttgtcacattattttcaca 9007409  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 9099717 - 9099662
Alignment:
Q  28 aaatataaagttgtcacattattttcacaagatagttcatacctgctgtctccgca 83  Q
    ||||||||  ||||||||||||||||||||| |||||| |||||||||||||||||    
T  9099717 aaatataattttgtcacattattttcacaagctagttcgtacctgctgtctccgca 9099662  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 9136397 - 9136338
Alignment:
Q  28 aaatataaagttgtcacattattttcacaagatagttcatacctgctgtctccgcagtgt 87  Q
    ||||||||| |||| | |||||||||||||| ||||||||| |||||||| |||||||||    
T  9136397 aaatataaacttgttatattattttcacaagctagttcataactgctgtcaccgcagtgt 9136338  T

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