View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336-Insertion-98 (Length: 202)
Name: NF4336-Insertion-98
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336-Insertion-98 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 33049856 - 33049660
Alignment:
| Q |
6 |
attttcacaacgcataatcttctcaaaaatatcactattcacacactagtgaatgagaaacattgcatttccatgtttcttcttcgtatctttgtttgca |
105 |
Q |
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| T |
33049856 |
attttcacaacgcataatcttctcaaaaatatcactattcacacactagtgaatgagaaacattgcatttccatgtttcttcttcgtatctttgtttgca |
33049757 |
T |
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| Q |
106 |
gtttgttgaacctcagttgtgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatatgaagattaccttcatcttca |
202 |
Q |
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| T |
33049756 |
gtttgttgaacctcagttgcgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatatgaagattaccttcatcttca |
33049660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 28452446 - 28452642
Alignment:
| Q |
6 |
attttcacaacgcataatcttctcaaaaatatcactattcacacactagtgaatgagaaacattgcatttccatgtttcttcttcgtatctttgtttgca |
105 |
Q |
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| T |
28452446 |
attttcacagtgcatgatcttctccaaaatctcatcattaacaccatagtgaatgagaaacattgatttcccatcttttttcttcgcatctttatgtcca |
28452545 |
T |
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| Q |
106 |
gtttgttgaacctcagttgtgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatatgaagattaccttcatcttca |
202 |
Q |
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| T |
28452546 |
atttgttgaacctctgttgtgtttcttgcaagcattggtagaccatccttcgcagcatcaagaacatcttgataccggaatattaccttcatcttca |
28452642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 11355747 - 11355855
Alignment:
| Q |
94 |
tctttgtttgcagtttgttgaacctcagttgtgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatatgaagattacct |
193 |
Q |
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||||||||||||| ||||| || ||||||| ||||||||| | || ||||| ||| || ||||| |||||||||| ||||||| ||||||| |||| |
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| T |
11355747 |
tctttgtttgcagcttgtttcacatcagttgcgtttcttgccaatgctggtaccccatcattaacaacttcaagaacatcttggtatctgaagatcacct |
11355846 |
T |
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| Q |
194 |
tcatcttca |
202 |
Q |
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| T |
11355847 |
ccatcttca |
11355855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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