View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336_high_12 (Length: 386)

Name: NF4336_high_12
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336_high_12
NF4336_high_12
[»] chr4 (2 HSPs)
chr4 (18-377)||(3294554-3294913)
chr4 (233-278)||(49496851-49496895)
[»] chr2 (2 HSPs)
chr2 (118-278)||(28502839-28502999)
chr2 (233-278)||(19710404-19710448)
[»] chr1 (2 HSPs)
chr1 (131-278)||(51444399-51444547)
chr1 (233-278)||(24274818-24274862)
[»] chr7 (2 HSPs)
chr7 (211-279)||(10531045-10531113)
chr7 (113-186)||(10531108-10531181)
[»] scaffold0657 (1 HSPs)
scaffold0657 (233-278)||(5552-5596)
[»] chr6 (2 HSPs)
chr6 (233-278)||(25003813-25003857)
chr6 (233-278)||(34635177-34635221)
[»] chr3 (1 HSPs)
chr3 (233-278)||(16473947-16473991)


Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 3294554 - 3294913
Alignment:
Q  18 gttgtaaggatcccttaactcaaatgcaaagtttaagttagtgtaaatgagtaagtgttaaattcattcatttttgcatccatgtgggtgtgaatgagtg 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  3294554 gttgtaaggatcccttgactcaaatgcaaagtttaagttagtgtaaatgagtaagtgttaaattctttcatttttgcatccatgtcggtgtgaatgagtg 3294653  T
Q  118 taagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtctactttatttttattatcatttaaatagtaaactttat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  3294654 taagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtctattttatttttattatcattgaaatagtaaactttat 3294753  T
Q  218 ctttattttgagatcttctagtttcgaggacgaaacaattcttaagggggtaataatgtaattaccatttttactttcaatttgtgttacttgagtgtgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3294754 ctttattttgagatcttctagtttcgaggacgaaacaattcttaagggggtaataatgtaattaccatttttactttcaatttgtgttacttgagtgtgt 3294853  T
Q  318 gtcatgcccttcattctttcgatctctgtcttgccaatctttttctacatatattttctt 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3294854 gtcatgcccttcattctttcgatctctgtcttgccaatctttttctacatatattttctt 3294913  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 49496851 - 49496895
Alignment:
Q  233 ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa 278  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  49496851 ttctagtttcgaggacgaaactatt-ttaagggggtaataatgtaa 49496895  T

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Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 118 - 278
Target Start/End: Complemental strand, 28502999 - 28502839
Alignment:
Q  118 taagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtctactttatttttattatcatttaaatagtaaactttat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||     
T  28502999 taagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtgtactttatttttattatcatttaaatagtaaacattac 28502900  T
Q  218 ctttattttgagatcttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa 278  Q
    | || |||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  28502899 ccttttttttagatcttctagtttcgaggatgaaactatttttaagggggtaataatgtaa 28502839  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 19710448 - 19710404
Alignment:
Q  233 ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa 278  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  19710448 ttctagtttcgaggacgaaactatt-ttaagggggtaataatgtaa 19710404  T

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Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 51444547 - 51444399
Alignment:
Q  131 ttttctttaaacgtatacacacatattttattctatctatgtttaagtctactttatttttattatcatttaaatagtaaactttatctttatttt-gag 229  Q
    |||||||||||  |||  | |||||||||||||||||||| ||||||||||||||||||| ||| |  |||||||||| ||||| | ||||||||| |||    
T  51444547 ttttctttaaaaatatgtatacatattttattctatctatatttaagtctactttattttcattcttgtttaaatagtgaacttgacctttattttagag 51444448  T
Q  230 atcttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa 278  Q
    ||||| |||||||| ||||||||  ||| ||||||||||||||||||||    
T  51444447 atcttttagtttcggggacgaaattatttttaagggggtaataatgtaa 51444399  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 24274818 - 24274862
Alignment:
Q  233 ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa 278  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  24274818 ttctagtttcgaggacgaaactatt-ttaagggggtaataatgtaa 24274862  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 10531113 - 10531045
Alignment:
Q  211 actttatctttattttgagatcttctagtttcgaggacgaaacaattcttaagggggtaataatgtaat 279  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  10531113 actttacctttattttgagagcttctagtttcgaggacgaaacaatttttaagggggtaataatgtaat 10531045  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 10531181 - 10531108
Alignment:
Q  113 gagtgtaagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtctacttta 186  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||    
T  10531181 gagtgtaagatcctagaattttctttaaacatatacatacatattttattctatctatgcttaagtttacttta 10531108  T

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Target: scaffold0657 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 5596 - 5552
Alignment:
Q  233 ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa 278  Q
    ||||||||||||||||||||| ||| |||||||||||| |||||||    
T  5596 ttctagtttcgaggacgaaactatt-ttaagggggtaagaatgtaa 5552  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 25003813 - 25003857
Alignment:
Q  233 ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa 278  Q
    ||||||||||||||||||||| ||| |||||||||||| |||||||    
T  25003813 ttctagtttcgaggacgaaactatt-ttaagggggtaagaatgtaa 25003857  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 34635177 - 34635221
Alignment:
Q  233 ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa 278  Q
    ||||||||||||||||||||| ||| |||||||||||| |||||||    
T  34635177 ttctagtttcgaggacgaaactatt-ttaagggggtaagaatgtaa 34635221  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 16473947 - 16473991
Alignment:
Q  233 ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa 278  Q
    ||||||||||||||||||||| ||| |||||||||||| |||||||    
T  16473947 ttctagtttcgaggacgaaactatt-ttaagggggtaagaatgtaa 16473991  T

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