View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4336_high_19 (Length: 322)
Name: NF4336_high_19
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 55 - 306
Target Start/End: Original strand, 6012033 - 6012284
Alignment:
| Q |
55 |
tcatagttattaaatttcaaatccaacagtggtaaagagatcaagtcacaaaaatgccacgttggtattagagttgaactgtataacacaatttaattgt |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6012033 |
tcatagttattaaatttcaaatccaacagtgataaagagatcaagtcacaaaaatgccacattggtattagagttgaactgtataacacaatttaattgt |
6012132 |
T |
|
| Q |
155 |
agcatgcatatgatatattgtacattatcattttggttagtcctaagaaataattagtaacaagctacatttaatggttgcttttacagggaaagagagt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6012133 |
agcatgcatatgatatattgtacattatcattttggttagtcctaagaaataattagtaacaagctacatttaatggttgcttttacagggaaagagagt |
6012232 |
T |
|
| Q |
255 |
acagaaatgtgttgaaacactggatatactaaagacatctaatgctacaatg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6012233 |
acagaaatgtgttgaaacactggatatactaaagacatctaatgctacaatg |
6012284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University