View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4336_high_21 (Length: 301)
Name: NF4336_high_21
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_high_21 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 114 - 301
Target Start/End: Original strand, 50745846 - 50746033
Alignment:
| Q |
114 |
tacaatatgagagtaacaaacagttgtactaaactcatatccatattggatggttccttattcgagaattgacacaaatggagcccctttaacttagtgg |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
50745846 |
tacaatatgagagtaacaaacaattgtactaaactcatattcatattggatggttccttattcgagaattgactcaaatggagcctctttaacttagtgg |
50745945 |
T |
|
| Q |
214 |
tagagtaacactatggtaaaacataagttatcggttcatatccgataaaaatttttattnnnnnnntaacaacaataatgttctgatt |
301 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
50745946 |
tagagtaacactatggtaaagcataagttgtcggttcatatccgataaaagtttttattcaaaaaataacaacaatagtgttctgatt |
50746033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 125 - 261
Target Start/End: Complemental strand, 20159764 - 20159628
Alignment:
| Q |
125 |
agtaacaaacagttgtactaaactcatatccatattggatggttccttattcgagaattgacacaaatggagcccctttaacttagtggtagagtaacac |
224 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
20159764 |
agtaacaaatagatgtactaaactcatatccatattggatggttccttattcgggaattgactcaaatggagcccctttaactcagtggtagagtaacgt |
20159665 |
T |
|
| Q |
225 |
tatggtaaaacataagttatcggttcatatccgataa |
261 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
20159664 |
catggtaaggtgtaagtcatcggttcaaatccgataa |
20159628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 50745734 - 50745822
Alignment:
| Q |
1 |
tatctaaaataaacaagaataatgacatccaccgaacaattatttacaacctttaagataccttctttctcttttaacaacgtagagat |
89 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50745734 |
tatctaaaataaacaagaataatgacatctacagaacaattttttacaacctttaagataccttctttctcttttaacaacgtagagat |
50745822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 125 - 261
Target Start/End: Original strand, 420686 - 420822
Alignment:
| Q |
125 |
agtaacaaacagttgtactaaactcatatccatattggatggttccttattcgagaattgacacaaatggagcccctttaacttagtggtagagtaacac |
224 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| | |
|
|
| T |
420686 |
agtaacaaatagatgtactaaactcatatccatattggatggttccttattcgggaattgactcaaatggagcccctttaactcagtggtagagtaacgc |
420785 |
T |
|
| Q |
225 |
tatggtaaaacataagttatcggttcatatccgataa |
261 |
Q |
| |
|
||||||| | ||||| ||||||||| ||||||||| |
|
|
| T |
420786 |
catggtaaggcgtaagtcatcggttcaaatccgataa |
420822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 214902 - 214969
Alignment:
| Q |
195 |
agcccctttaacttagtggtagagtaacactatggtaaaacataagttatcggttcatatccgataaa |
262 |
Q |
| |
|
||||| ||||||| ||||||||||||| | ||||||| ||||||| ||||||||| |||||||||| |
|
|
| T |
214902 |
agcccttttaactcagtggtagagtaatgccatggtaaggcataagtcatcggttcaaatccgataaa |
214969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 125 - 261
Target Start/End: Original strand, 36332537 - 36332673
Alignment:
| Q |
125 |
agtaacaaacagttgtactaaactcatatccatattggatggttccttattcgagaattgacacaaatggagcccctttaacttagtggtagagtaacac |
224 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| | |
|
|
| T |
36332537 |
agtaacaaatagatgtactaaactcatatccatattggatggttccttattcgggaattgactcaaatggagcccctttaactcagtggtagagtaacgc |
36332636 |
T |
|
| Q |
225 |
tatggtaaaacataagttatcggttcatatccgataa |
261 |
Q |
| |
|
||||||| | ||||| ||||||||| ||||||||| |
|
|
| T |
36332637 |
catggtaaggcgtaagtcatcggttcaaatccgataa |
36332673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 125 - 261
Target Start/End: Original strand, 12089226 - 12089362
Alignment:
| Q |
125 |
agtaacaaacagttgtactaaactcatatccatattggatggttccttattcgagaattgacacaaatggagcccctttaacttagtggtagagtaacac |
224 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| | |
|
|
| T |
12089226 |
agtaacaaatagatgtactaaactcatatccatattggatggttccttattcgggaattgactcaaatggagcccctttaactcagtggtagagtaacgc |
12089325 |
T |
|
| Q |
225 |
tatggtaaaacataagttatcggttcatatccgataa |
261 |
Q |
| |
|
||||||| | ||||| ||||||||| ||||||||| |
|
|
| T |
12089326 |
catggtaaggcgtaagtcatcggttcaaatccgataa |
12089362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 1898843 - 1898889
Alignment:
| Q |
128 |
aacaaacagttgtactaaactcatatccatattggatggttccttat |
174 |
Q |
| |
|
|||||| || |||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
1898843 |
aacaaatagatgtattaaactcatatacatattggatggttccttat |
1898889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University