View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336_high_22 (Length: 296)

Name: NF4336_high_22
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336_high_22
NF4336_high_22
[»] chr3 (5 HSPs)
chr3 (10-179)||(50760040-50760209)
chr3 (10-96)||(44294503-44294591)
chr3 (237-296)||(50760267-50760326)
chr3 (237-296)||(44295160-44295219)
chr3 (100-179)||(44295024-44295103)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 50760040 - 50760209
Alignment:
Q  10 aagaatatacattgtcttttccagtaacagcaattgtgtctccaaccacatgagatttgagctactttctgtcaaaccaaacaaaagtgatttattctgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50760040 aagaatatacattgtcttttccagtaacagcaattgtgtctccaaccacatgagatttgagctactttctgtcaaaccaaacaaaagtgatttattctgc 50760139  T
Q  110 tcatcaatgatattttcctttgtatcatannnnnnnccttgacctgatattagtaccatttcatagtgta 179  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  50760140 tcatcaatgatattttcctttgtatcatatttttttccttgacctgatattagtaccatttcatagtgta 50760209  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 44294591 - 44294503
Alignment:
Q  10 aagaatatacattgtcttttccagtaacagcaattgtgt--ctccaaccacatgagatttgagctactttctgtcaaaccaaacaaaag 96  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44294591 aagaatatacattgtctttttcagtaacagcaattgtgtgtctccaaccacatgagatttgagctactttctgtcaaaccaaacaaaag 44294503  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 50760267 - 50760326
Alignment:
Q  237 gctaactgttgtattttccccctaaataggaaaaaccttggcctccttggttgagagata 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50760267 gctaactgttgtattttccccctaaataggaaaaaccttggcctccttggttgagagata 50760326  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 44295160 - 44295219
Alignment:
Q  237 gctaactgttgtattttccccctaaataggaaaaaccttggcctccttggttgagagata 296  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  44295160 gctaactgttgtatttttcccctaaataggaaaaaccttggcctccttagctgagagata 44295219  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 44295024 - 44295103
Alignment:
Q  100 tttattctgctcatcaatgatattttcctttgtatcatannnnnnnccttgacctgatattagtaccatttcatagtgta 179  Q
    ||||||||||||||||||||| ||||||||||||| |||       |||||||||||||||||||||||||||| |||||    
T  44295024 tttattctgctcatcaatgatgttttcctttgtattatattttttgccttgacctgatattagtaccatttcattgtgta 44295103  T

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