View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_high_26 (Length: 256)
Name: NF4336_high_26
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_high_26 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 3051792 - 3052040
Alignment:
| Q |
8 |
ccaagaatattttgttttcatttagtaaagttaaattctaactcaaaagaatctcagaaaatcaatgctaatgtgagtatttggagagactaaaaactta |
107 |
Q |
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| T |
3051792 |
ccaagaatattttgttttcatttagtaaagttaaattctaactcaaaagaatctcagaaaatcaatgctaatgtgagtatttggagagactaaaaactta |
3051891 |
T |
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| Q |
108 |
ctcgtatcgaatctatgtaaccaaattcctctctttttactatgtttcaactttctaattttaactatcttagattatagttttacagggttcaaatttg |
207 |
Q |
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| T |
3051892 |
ctcgtaccgaatctatgtaaccaaattcctctctttttactatgtttcaactttctaattttaactatcttagattatagttttacagggttcaaatttg |
3051991 |
T |
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| Q |
208 |
atgcaatcacattactagagtaataatgtgctgattccactttgccatt |
256 |
Q |
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| T |
3051992 |
atgcaatcacattactagagtaataatgtgctgattccactttgccatt |
3052040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 3037420 - 3037536
Alignment:
| Q |
141 |
tttttactatgtttcaactttctaattttaactatcttagattatagttttacagggttcaaatttgatgcaat--cacattactagagtaataatgtgc |
238 |
Q |
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| T |
3037420 |
tttttgctatgtttcaacttt-tactttaaactatcttagtttatagtcttacagggttcaaatttgatgcaatcacacattagtagagtaataatgtgc |
3037518 |
T |
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| Q |
239 |
tgattccactttgccatt |
256 |
Q |
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| T |
3037519 |
tgattccactttgccatt |
3037536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 3065055 - 3065117
Alignment:
| Q |
166 |
ttttaactatcttagattatagttttacagggttcaaatttgatgcaatcacattactagagt |
228 |
Q |
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| T |
3065055 |
ttttaactacattaggttatagttttacagggttcaagttggatgcaatcacattgctagagt |
3065117 |
T |
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