View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336_high_3 (Length: 730)

Name: NF4336_high_3
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336_high_3
NF4336_high_3
[»] chr3 (12 HSPs)
chr3 (11-457)||(37587874-37588321)
chr3 (486-711)||(37587648-37587873)
chr3 (467-708)||(36811124-36811365)
chr3 (549-678)||(37580947-37581076)
chr3 (467-674)||(27005903-27006110)
chr3 (526-675)||(33709104-33709253)
chr3 (549-693)||(37582330-37582474)
chr3 (467-705)||(36875338-36875579)
chr3 (538-696)||(33714964-33715122)
chr3 (27-83)||(33722010-33722065)
chr3 (242-305)||(37583191-37583254)
chr3 (549-641)||(33094091-33094183)
[»] chr4 (1 HSPs)
chr4 (610-682)||(6006231-6006303)
[»] chr5 (1 HSPs)
chr5 (652-702)||(12845539-12845589)


Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 11 - 457
Target Start/End: Complemental strand, 37588321 - 37587874
Alignment:
Q  11 tgagatgaaaaactatatgttcacaatagatagaaatctgacagtagaagaaaaatggcagaaactatcaataacagtgtatttcctcctgtaaaaagtt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  37588321 tgagatgaaaaactatatgttcacaatagatagaaatctgacagtagaagaaaaatggcagaaactatcaataacagtgtatttcttccggtaaaaagtt 37588222  T
Q  111 gaactcagcataaaataaaagaagggtaagagtaaatcaaaggcaatatagaagttgtttctatcatcaaaggcaaatctcaaaggataaaaaacacaat 210  Q
     |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37588221 aaactcaccataaaataaaagaagggtaagagtaaatcaaaggcaatatagaagttgtttctatcatcaaaggcaaatctcaaaggataaaaaacacaat 37588122  T
Q  211 gaagttaggtttctagcaaaagagt-gagtcaaaaaatactagtattccaaatttggccgaagagaaggaaaatcgttcaaaaagtattagttagtcata 309  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37588121 gaagttaggtttctagcaaaagattagagtcaaaaaatactagtattccagatttggccgaaaagaaggaaaatcgttcaaaaagtattagttagtcata 37588022  T
Q  310 aaacaaggggagtagagttttctaactcaaaatcagtatacggatatcgctagcaattaccaatgtatggagaaagtaatggtatctaattggaaatcaa 409  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37588021 aaacaagcggagtagagttttctaactcaaaatcagtatatggatatcgctagcaattaccaatgtatggagaaagtaatggtatctaattggaaatcaa 37587922  T
Q  410 gttctaactcaaaatcagtaacgtatctaattggaaacatgtgaaagt 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37587921 gttctaactcaaaatcagtaacgtatctaattggaaacatgtgaaagt 37587874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 486 - 711
Target Start/End: Complemental strand, 37587873 - 37587648
Alignment:
Q  486 ccaaagaagagttttctttcattgttacgaggatgaaaatgaggcggagcagttatttttataaatgatggcctcaaaagtgtcatccaggaaataatgt 585  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37587873 ccaaagaagagtttcctttcattgtcacgaggatgaaaatgaggcggagcagttatttttataaatgatggcctcaaaagtgtcatccaggaaataatgt 37587774  T
Q  586 tagcagacacttcacggcaatatcgcaaattaatctctctcaggtgtatgcagttttccacagctagcctcactcccttctctgtgacatcataacagtg 685  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37587773 tagcagacacttcacgacaatatcgcaaattaatctctctcaggtgtatgcagttttccacagctagcctcactcccttctctgtgacatcataacagtg 37587674  T
Q  686 tttcaggtccaattgcagaagccaag 711  Q
    ||||||||||||||||||||||||||    
T  37587673 tttcaggtccaattgcagaagccaag 37587648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 467 - 708
Target Start/End: Complemental strand, 36811365 - 36811124
Alignment:
Q  467 ctagcaaacaagacatcgcccaaagaagagttttctttcattgttacgaggatgaaaatgaggcggagcagttatttttataaatgatggcctcaaaagt 566  Q
    ||||||||||||||||| || ||||| | |||| || ||||||| ||| ||| | |||||||| ||||| | || |||| | |||||||||||  ||| |    
T  36811365 ctagcaaacaagacatctcctaaagaggggtttcctatcattgtcacggggacggaaatgaggtggagccgctacttttttcaatgatggccttgaaaat 36811266  T
Q  567 gtcatccaggaaataatgttagcagacacttcacggcaatatcgcaaattaatctctctcaggtgtatgcagttttccacagctagcctcactcccttct 666  Q
     |||||||||||| ||  |||| |||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||| ||  || |||  ||||||||||    
T  36811265 atcatccaggaaacaacattagtagacactttacgacaagatcgcaaattaatctctctcaggtgaatgcagttttctaccacttgccggactcccttct 36811166  T
Q  667 ctgtgacatcataacagtgtttcaggtccaattgcagaagcc 708  Q
    ||||||||| |||||| |||| |||||| | ||| |||||||    
T  36811165 ctgtgacataataacaatgttccaggtcaagttgtagaagcc 36811124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 549 - 678
Target Start/End: Complemental strand, 37581076 - 37580947
Alignment:
Q  549 aatgatggcctcaaaagtgtcatccaggaaataatgttagcagacacttcacggcaatatcgcaaattaatctctctcaggtgtatgcagttttccacag 648  Q
    ||||| |||||  ||| ||| |||||||||| ||| ||| ||||||||| ||| |||| | |||||||||||||||||||||||||||| ||||| ||      
T  37581076 aatgaaggccttgaaaatgttatccaggaaacaatattaccagacactttacgacaattttgcaaattaatctctctcaggtgtatgcatttttctacta 37580977  T
Q  649 ctagcctcactcccttctctgtgacatcat 678  Q
    |||| |||||||||||||||||||||||||    
T  37580976 ctagtctcactcccttctctgtgacatcat 37580947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 467 - 674
Target Start/End: Complemental strand, 27006110 - 27005903
Alignment:
Q  467 ctagcaaacaagacatcgcccaaagaagagttttctttcattgttacgaggatgaaaatgaggcggagcagttatttttataaatgatggcctcaaaagt 566  Q
    |||||||||||||||||||||| ||| |||||| || |||  || ||| ||| |||||||||||||||| || |||||| | | |||||||||  ||| |    
T  27006110 ctagcaaacaagacatcgcccagagaggagtttcctatcacagtcacggggacgaaaatgaggcggagctgtaatttttctcagtgatggccttgaaaat 27006011  T
Q  567 gtcatccaggaaataatgttagcagacacttcacggcaatatcgcaaattaatctctctcaggtgtatgcagttttccacagctagcctcactcccttct 666  Q
     |||||||||||||||  |||||||| |||  ||| ||| ||| || |||||||||||| |||| | |||| ||||| ||  ||||||| || || ||||    
T  27006010 atcatccaggaaataacattagcagaaactctacgacaagatcccagattaatctctcttaggtatgtgcatttttctaccactagcctaacccctttct 27005911  T
Q  667 ctgtgaca 674  Q
    ||||||||    
T  27005910 ctgtgaca 27005903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 526 - 675
Target Start/End: Complemental strand, 33709253 - 33709104
Alignment:
Q  526 gaggcggagcagttatttttataaatgatggcctcaaaagtgtcatccaggaaataatgttagcagacacttcacggcaatatcgcaaattaatctctct 625  Q
    ||||||| ||| |||||| | | |||||||||||||||||| |||||  || || | | | ||||||||||| ||| ||||||  |||||||| ||||||    
T  33709253 gaggcggtgcaattatttctctcaatgatggcctcaaaagtatcatcttggcaacagtatcagcagacactttacgacaatattccaaattaagctctct 33709154  T
Q  626 caggtgtatgcagttttccacagctagcctcactcccttctctgtgacat 675  Q
    |||||||||||| || || |   ||||||||||||||||||| |||||||    
T  33709153 caggtgtatgcatttgtctaacactagcctcactcccttctccgtgacat 33709104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 549 - 693
Target Start/End: Complemental strand, 37582474 - 37582330
Alignment:
Q  549 aatgatggcctcaaaagtgtcatccaggaaataatgttagcagacacttcacggcaatatcgcaaattaatctctctcaggtgtatgcagttttccacag 648  Q
    |||||||||||||||||| |||||  || || ||| | ||||||||||| |   ||| || |||||||||||||||||| | ||||||||||||| ||      
T  37582474 aatgatggcctcaaaagtatcatcttggcaacaatatcagcagacactttataacaacattgcaaattaatctctctcaagcgtatgcagttttctacca 37582375  T
Q  649 ctagcctcactcccttctctgtgacatcataacagtgtttcaggt 693  Q
    ||||||||||||  ||||||||| |||||| ||| |||| |||||    
T  37582374 ctagcctcactcagttctctgtgccatcatgacaatgttccaggt 37582330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 467 - 705
Target Start/End: Original strand, 36875338 - 36875579
Alignment:
Q  467 ctagcaaacaagacatcgcccaaagaagagt--tttctttcattgttacgaggatgaaaatgaggcggagcagttatttttataaatgatggcctcaaaa 564  Q
    |||||||||||||||||||||||||| ||||  || || |||  || ||| |||  ||||||||||||||  |||  |||| | || ||||||||  |||    
T  36875338 ctagcaaacaagacatcgcccaaagaggagtaattcctatcacagtcacggggacaaaaatgaggcggagttgttccttttctcaaggatggccttgaaa 36875437  T
Q  565 gtgtcatccaggaaataatgttagcagacacttcacggcaatatcgcaaattaatctctctc-aggtgtatgcagttttccacagctagcctcactccct 663  Q
     | |||||||||||| ||| ||||  ||||||  | | |||| | ||||||||||||||||| || ||| | ||| |||| |  |||| ||||| |||||    
T  36875438 atatcatccaggaaacaattttagtggacactatatgacaatgttgcaaattaatctctctctagatgtgttcagctttctagcgctaacctcaatccct 36875537  T
Q  664 tctctgtgacatcataacagtgtttcaggtccaattgcagaa 705  Q
    |||| |||||||  ||||| ||||||||||||| ||||||||    
T  36875538 tctccgtgacatggtaacaatgtttcaggtccagttgcagaa 36875579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 538 - 696
Target Start/End: Complemental strand, 33715122 - 33714964
Alignment:
Q  538 ttatttttataaatgatggcctcaaaagtgtcatccaggaaataatgttagcagacacttcacggcaatatcgcaaattaatctctctcaggtgtatgca 637  Q
    |||||||| | |||||||||||||||||| |||||  || || | | |  ||| | |||| | | |||||| |||||||||||||||||||||||| |||    
T  33715122 ttatttttctcaatgatggcctcaaaagtatcatcttggcaacagtatcggcaaatactttaggacaatattgcaaattaatctctctcaggtgtacgca 33715023  T
Q  638 gttttccacagctagcctcactcccttctctgtgacatcataacagtgtttcaggtcca 696  Q
    ||| || |   ||||||||||||||||||| ||||||| || ||| | || ||||||||    
T  33715022 gttgtctaacactagcctcactcccttctccgtgacatgatgacaatcttccaggtcca 33714964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 33722065 - 33722010
Alignment:
Q  27 atgttcacaatagatagaaatctgacagtagaagaaaaatggcagaaactatcaata 83  Q
    ||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||    
T  33722065 atgttcacaatagatagaaatctgaca-taaaagaaaaatagcagaaactatcaata 33722010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 37583254 - 37583191
Alignment:
Q  242 aaaaatactagtattccaaatttggccgaagagaaggaaaatcgttcaaaaagtattagttagt 305  Q
    |||||||||||||||||||||||||| ||  |||||||||||| ||||| ||||||||| ||||    
T  37583254 aaaaatactagtattccaaatttggcagacaagaaggaaaatctttcaataagtattagctagt 37583191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 641
Target Start/End: Complemental strand, 33094183 - 33094091
Alignment:
Q  549 aatgatggcctcaaaagtgtcatccaggaaataatgttagcagacacttcacggcaatatcgcaaattaatctctctcaggtgtatgcagttt 641  Q
    |||||||||||||||||| |||||| |   | ||| |||||||| |||| ||| |||| | |||||||||||||||| |||||| ||||||||    
T  33094183 aatgatggcctcaaaagtatcatcctgtcgacaatattagcagaaactttacgacaatgttgcaaattaatctctcttaggtgtttgcagttt 33094091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 682
Target Start/End: Original strand, 6006231 - 6006303
Alignment:
Q  610 gcaaattaatctctctcaggtgtatgcagttttccacagctagcctcactcccttctctgtgacatcataaca 682  Q
    ||||||| ||||||||||  ||| |||||||||| ||  || || |||||||||||| |||||||||||||||    
T  6006231 gcaaatttatctctctcaattgtttgcagttttctacgacttgcatcactcccttctttgtgacatcataaca 6006303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 652 - 702
Target Start/End: Original strand, 12845539 - 12845589
Alignment:
Q  652 gcctcactcccttctctgtgacatcataacagtgtttcaggtccaattgca 702  Q
    ||||||||||||||||||| ||||||| ||| | || ||||||||||||||    
T  12845539 gcctcactcccttctctgtaacatcattacaattttccaggtccaattgca 12845589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University