View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_high_30 (Length: 244)
Name: NF4336_high_30
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 34192170 - 34191945
Alignment:
| Q |
1 |
tgcaacgttttgtaaaattaaggggccaaaatattcannnnnnnnaacaaggggccagaatcgtaacttttggaaacttagggaggaaaagtgcacttta |
100 |
Q |
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| T |
34192170 |
tgcaacattttgtaaaattaaggggccaaaatatttattttttttaacaaggggccataatcgtaacttatggaaacttagggaggaaaagtgcacttta |
34192071 |
T |
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| Q |
101 |
gccaataattaattgtatgtgtaaaagatgtttacaccataacttaagatatggtacaattttgtgacaatagttgagtagcttaataaactacacacat |
200 |
Q |
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| T |
34192070 |
accaataattaattgtatgtgtaaaagatgtttacaccataacttgagatatggtacaattttgtgacaatagttgagtagcttaagaaactacacacat |
34191971 |
T |
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| Q |
201 |
tgaaagtgtgcaaaacttgtaaacac |
226 |
Q |
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| T |
34191970 |
tgaaagtgtgcaaaacttgtaaacac |
34191945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 13345596 - 13345552
Alignment:
| Q |
59 |
aatcgtaacttttggaaacttagggaggaaaagtgcactttagcc |
103 |
Q |
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| T |
13345596 |
aatcgcaacttttggaaacttaagggggaaaagtgaactttagcc |
13345552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 35067050 - 35067103
Alignment:
| Q |
51 |
ggggccagaatcgtaacttttggaaactta-gggaggaaaagtgcactttagcc |
103 |
Q |
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| T |
35067050 |
ggggccaaaatcgcaactttttgaaacttaaggggggaaaagtgcactttagcc |
35067103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 21505467 - 21505416
Alignment:
| Q |
51 |
ggggccagaatcgtaacttttggaaacttagggaggaaaagtgcactttagcc |
103 |
Q |
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| T |
21505467 |
ggggccaaaatcgcaactttttgaaagttaggg-ggaaaagtgcactttagcc |
21505416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 28262245 - 28262193
Alignment:
| Q |
51 |
ggggccagaatcgtaacttttggaaacttagggaggaaaagtgcactttagcc |
103 |
Q |
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||||||| ||||| ||| ||| |||| |||||| ||||||||||||||||||| |
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| T |
28262245 |
ggggccaaaatcgcaacgttttgaaagttaggggggaaaagtgcactttagcc |
28262193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 13645849 - 13645789
Alignment:
| Q |
46 |
aacaaggggccagaatcgtaacttttggaaacttagggag-gaaaagtgcactttagccaa |
105 |
Q |
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||||||||| || ||||||||| ||| ||||||||||||| |||| |||||||||||||| |
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| T |
13645849 |
aacaaggggtcaaaatcgtaacattttgaaacttagggagcgaaatttgcactttagccaa |
13645789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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