View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_high_31 (Length: 243)
Name: NF4336_high_31
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 32 - 226
Target Start/End: Complemental strand, 1238260 - 1238059
Alignment:
| Q |
32 |
agtctgaattttaatacttccttacacaatgcactagagtcatttttatggttcccac-------aaggtgtaatagatttacatttccgtttttctata |
124 |
Q |
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| T |
1238260 |
agtctgaattttaatatttccttacacaatgcactagagtcatttttatggttcccacttcgcacaaggtgtaatagatttacatttccgtttttctata |
1238161 |
T |
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| Q |
125 |
agtgtatacttgactgtgatggatgttatcagatttaaattatgcaatgagaaatgctgtttaaattttgaaaagtataaggcttgatatttatagacta |
224 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1238160 |
agtgtatacttggctgtgatggatgttatcagatttaaattatgcaatgagaaatgctgtttaaattttgaaaagtataaggcttgatatttatagacta |
1238061 |
T |
|
| Q |
225 |
ct |
226 |
Q |
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|| |
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| T |
1238060 |
ct |
1238059 |
T |
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