View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4336_high_9 (Length: 406)
Name: NF4336_high_9
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 5809741 - 5809352
Alignment:
| Q |
1 |
tgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgaccttgctgtacgtattgctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5809741 |
tgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactggatcgagaagctgatgatcttgctgtacgtattgctc |
5809642 |
T |
|
| Q |
101 |
tgggagaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagctttggaggagcttgcgaagggtaaagttgatgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5809641 |
tgggagaaacacaagtgatttcagaaacaaa-aacgcatttaaaaaagctggagtgaatgtggaagctttggaggagcttgcgaagggtaaagttgatgg |
5809543 |
T |
|
| Q |
201 |
cttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5809542 |
cttgaaaagaagtaaccatgtaattttagcgtagaacttgccttatggtgccaccgaaaatgaacttgcaaagattttggggaaatttggtagtttggat |
5809443 |
T |
|
| Q |
301 |
aaaataattctcgcct--acaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtctatgtattttctttattttg |
389 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5809442 |
aaaataattctcgcctcgacaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtctatgtattttctttattttg |
5809352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 37755173 - 37754793
Alignment:
| Q |
1 |
tgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgaccttgctgtacgtattgctc |
100 |
Q |
| |
|
|||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||| || ||| |||||||||||| |||||| |||| | ||| |
|
|
| T |
37755173 |
tgatgttaatagattgcagaaaacgcttctcggaaatatggtgttagtaaaagtgattttcttgatccagaagctgatgatcttgcttcacgtcattctc |
37755074 |
T |
|
| Q |
101 |
tgggagaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagctttggaggagcttgcgaagggtaaagttgatgg |
200 |
Q |
| |
|
||| | |||| |||||||||| |||||||| || ||||||||||||||||||||||||||||| || |||||||||||| ||| ||||||||||||| |
|
|
| T |
37755073 |
tggcacaaactcaagtgatttttgaaacaaaaaatgcatttaaaaaagctggagtgaatgtggagtctctggaggagcttgtgaattgtaaagttgatgg |
37754974 |
T |
|
| Q |
201 |
cttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggat |
300 |
Q |
| |
|
| |||||||||||||||||||| ||||||| || || ||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37754973 |
cgtgaaaagaagtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgcaaagatgtttgggaaatttggtagtttggat |
37754874 |
T |
|
| Q |
301 |
aaaataattctcgcct--acaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtc-tatgtatttt |
379 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |||||||||||| |||||||| | ||||||| |||| |||||||||| |
|
|
| T |
37754873 |
aaaataattctcccctcgacaaaaacattggccctggtatttttcc-ctctccttatgttcatgatgtgtcttatgtatttt |
37754793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 37761147 - 37760767
Alignment:
| Q |
1 |
tgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgaccttgctgtacgtattgctc |
100 |
Q |
| |
|
|||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||| || ||| |||||||||||| |||||| |||| | ||| |
|
|
| T |
37761147 |
tgatgttaatagattgcagaaaacgcttctcggaaatatggtgttagtaaaagtgattttcttgatccagaagctgatgatcttgcttcacgtcattctc |
37761048 |
T |
|
| Q |
101 |
tgggagaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagctttggaggagcttgcgaagggtaaagttgatgg |
200 |
Q |
| |
|
||| | |||| |||||||||| |||||||| || ||||||||||||||||||||||||||||| || |||||||||||| ||| ||||||||||||| |
|
|
| T |
37761047 |
tggcacaaactcaagtgatttttgaaacaaaaaatgcatttaaaaaagctggagtgaatgtggagtctctggaggagcttgtgaattgtaaagttgatgg |
37760948 |
T |
|
| Q |
201 |
cttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggat |
300 |
Q |
| |
|
| |||||||||||||||||||| ||||||| || || ||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37760947 |
cgtgaaaagaagtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgcaaagatgtttgggaaatttggtagtttggat |
37760848 |
T |
|
| Q |
301 |
aaaataattctcgcct--acaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtc-tatgtatttt |
379 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |||||||||||| |||||||| | ||||||| |||| |||||||||| |
|
|
| T |
37760847 |
aaaataattctcccctcgacaaaaacattggccctggtatttttcc-ctctccttatgttcatgatgtgtcttatgtatttt |
37760767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 38605530 - 38605875
Alignment:
| Q |
1 |
tgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgaccttgctgtacgtattgctc |
100 |
Q |
| |
|
||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||| || || |||||||||||| |||||| | | |||||| |
|
|
| T |
38605530 |
tgatgttaatagattacagaaaacgttactcggaaacatggtgttagtaaaagtgatttattgggtccagaagctgatgatgttgctgcaaatgttgctc |
38605629 |
T |
|
| Q |
101 |
tgggagaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagctttggaggagcttgcgaagggtaaagttgatgg |
200 |
Q |
| |
|
|||||||||| | ||||||| ||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
38605630 |
tgggagaaactgatgtgattttagaaacaaaaaatgcatttaaaaaggctggagtgaatgtggagtctttggaggagcttgcggagggtaaagtttatgg |
38605729 |
T |
|
| Q |
201 |
cttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttggat |
300 |
Q |
| |
|
| | |||||||||||||||||| ||||||| || || ||||| |||||||| || ||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
38605730 |
cgttaaaagaagtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgcagagatgtttgggaaatttggtagtttggat |
38605829 |
T |
|
| Q |
301 |
aaaataattctcgcct--acaaaaacattggccttggtatttttcc |
344 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||| |||||||||||| |
|
|
| T |
38605830 |
aaaataattctcccctcgacaagaacattggccctggtatttttcc |
38605875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 37739321 - 37738980
Alignment:
| Q |
1 |
tgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgaccttgctgtacg-tattgct |
99 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| ||| ||| ||||||||||| |||||| ||| |||| || |
|
|
| T |
37739321 |
tgatgttaatagattgtagaaaacgctgctcggaaacatggtgttagtaaaagtgattttctggatccagaagctgatggtcttgcttcacggtatt-ct |
37739223 |
T |
|
| Q |
100 |
ctgggagaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagctttggaggagcttgcgaagggtaaagttgatg |
199 |
Q |
| |
|
|||| |||||| | | |||| ||||||||| || ||||||| ||||||||||||||| ||||| || ||||||||| |||||||||||||||||||| |
|
|
| T |
37739222 |
ctggcagaaactgacgggattaaagaaacaaaaaatgcatttagaaaagctggagtgaacgtggagtctctggaggagcatgcgaagggtaaagttgatg |
37739123 |
T |
|
| Q |
200 |
gcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttgggaaatttggtagtttgga |
299 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||| || ||||| |||||||| || |||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37739122 |
gcaggaaaagaagtaaccatgtacttttagcgaaaaatttgccatatggtgctacggaaaatgatcttgcaaagatgtttgggaaatttggtagtttgga |
37739023 |
T |
|
| Q |
300 |
taaaataattctcgcct--acaaaaacattggccttggtattt |
340 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
37739022 |
taaaataattctgccctcgacaaaaacattggccctggtattt |
37738980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University