View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_low_11 (Length: 399)
Name: NF4336_low_11
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 33555010 - 33555381
Alignment:
| Q |
18 |
agttaggccatcggttaccagcatctttatagcaagtatgcatctttcgaatcaatggggatgagttatccctacatgcttcattggaatttaggacatt |
117 |
Q |
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| T |
33555010 |
agttaggccatcggttaccagcatctttatagcaagtatgcatctttcgaatcaatggggatgagttatccttacatgcttcattggaatttaggacatt |
33555109 |
T |
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| Q |
118 |
tctgtaatagttcattaggactagtgattttgttgttgtgttcattggatatgattctgctctatgtaaacaatgacctcttcccattccatcatttcca |
217 |
Q |
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| T |
33555110 |
tctgtaatagttcattaggactagtgattttgttgttgtgttcattggatatgattctgctctatgtaaacaatgatctcttcccattccatcatttcca |
33555209 |
T |
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| Q |
218 |
tctgcaatttcacaaagtcatcgaaattgtcatttacatttacggtatataatctgatcttagcagaaaataagaggaactcacatttattttccacaac |
317 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33555210 |
tctgcaatttcacaaagtcattgaaattgtcatttacatttacggtatataatctgatcttagcagaaaataagaggtactcacatttattttccacaac |
33555309 |
T |
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| Q |
318 |
atagttccattcataggcaatgcgttcagaagcctcttttgttgcatttgaagtgaacacaattaacctatg |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33555310 |
atagttccattcataggcaatgcgttcagaagcctcttttgttgcatttgaagtgaacacaattaacctatg |
33555381 |
T |
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