View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336_low_12 (Length: 397)

Name: NF4336_low_12
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336_low_12
NF4336_low_12
[»] chr1 (6 HSPs)
chr1 (1-379)||(41199817-41200194)
chr1 (75-379)||(1041505-1041812)
chr1 (75-314)||(41192634-41192877)
chr1 (1-248)||(41407385-41407627)
chr1 (1-38)||(1041836-1041873)
chr1 (1-38)||(41192901-41192938)
[»] chr2 (2 HSPs)
chr2 (75-379)||(33323096-33323403)
chr2 (1-38)||(33323427-33323464)
[»] scaffold0271 (1 HSPs)
scaffold0271 (1-248)||(23871-24113)
[»] scaffold0640 (1 HSPs)
scaffold0640 (75-248)||(3379-3549)
[»] chr6 (1 HSPs)
chr6 (157-306)||(16700352-16700496)
[»] chr3 (1 HSPs)
chr3 (78-217)||(12001799-12001938)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 41200194 - 41199817
Alignment:
Q  1 gatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttcttcaactaaatannnnnnncctgcaaattgcatctagtttcaaga 100  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  41200194 gatgtcctttgaaaataagtaggtccttccacttccaaattctaacttaggcttcttcaactaaatatttttttcctgcaaattgcatctagtttcaaga 41200095  T
Q  101 caactaaatgtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaa 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41200094 caactaaatgtccatattgctgaaaactataaattttgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaa 41199995  T
Q  201 tggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaa 300  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41199994 tcgtgtgatatgcatttattacgcaaaacatatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaa 41199895  T
Q  301 gactcctaaaacaaagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattgctgatt 379  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41199894 gactcctaaaac-aagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattactgatt 41199817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 75 - 379
Target Start/End: Complemental strand, 1041812 - 1041505
Alignment:
Q  75 cctgcaaattgcatctagtttcaagacaactaaatgtccatat----tgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaagg 170  Q
    |||||||||||||||||||||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1041812 cctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaagg 1041713  T
Q  171 cagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagt 270  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1041712 cagtcccaaatactgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagt 1041613  T
Q  271 atcctcctgttccaacttacacattgtgaagactcctaaaacaaagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccga 370  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1041612 atcctcctgttccaacttacacattgtgaagactgctaaaac-aagttcatttctagcttccacttttcttaaatagtctctcagccactttctcaccga 1041514  T
Q  371 ttgctgatt 379  Q
    || ||||||    
T  1041513 ttactgatt 1041505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 75 - 314
Target Start/End: Complemental strand, 41192877 - 41192634
Alignment:
Q  75 cctgcaaattgcatctagtttcaagacaactaaatgtccatat----tgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaagg 170  Q
    |||||||||||||||||||||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41192877 cctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaagg 41192778  T
Q  171 cagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagt 270  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41192777 cagtcccaaatactgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagt 41192678  T
Q  271 atcctcctgttccaacttacacattgtgaagactcctaaaacaa 314  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  41192677 atcctcctgttccaacttacacattgtgaagactgctaaaacaa 41192634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 41407627 - 41407385
Alignment:
Q  1 gatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttcttcaactaaatannnnnnncctgcaaattgcatctagtttcaaga 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||||||||  |        ||||||||||||||||||||| ||||    
T  41407627 gatgtcctttgaaaacatgtaggtccatccacttccaaattcagactttggcttcttcaacta--tttttttttcctgcaaattgcatctagttttaaga 41407530  T
Q  101 caactaaat-gtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatga 199  Q
    ||||||||| ||||||||| | || |    |||| ||||||||| ||| ||| |||||||||||||||||||||| |||||||||||| |||||||||||    
T  41407529 caactaaattgtccatattaccgaga----taaaatctgtcaactttcatactttttgttttgcagcaaggcagttccaaatactgattagaaagaatga 41407434  T
Q  200 atggtgtgatatgcatttattacgcaaaacagatgagaaatctaactga 248  Q
    || ||||| ||||| || ||||||||||||  |||||||||||||||||    
T  41407433 atagtgtgttatgctttaattacgcaaaactaatgagaaatctaactga 41407385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1041873 - 1041836
Alignment:
Q  1 gatgtcctttgaaaacaagtaggtccatccacttccaa 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  1041873 gatgtcctttgaaaacaagtaggttcatccacttccaa 1041836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41192938 - 41192901
Alignment:
Q  1 gatgtcctttgaaaacaagtaggtccatccacttccaa 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  41192938 gatgtcctttgaaaacaagtaggttcatccacttccaa 41192901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 75 - 379
Target Start/End: Complemental strand, 33323403 - 33323096
Alignment:
Q  75 cctgcaaattgcatctagtttcaagacaactaaatgtccatat----tgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaagg 170  Q
    |||||||||||||||||||||||||||||||||||||||||||    ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33323403 cctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaagg 33323304  T
Q  171 cagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagt 270  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33323303 cagtcccaaatactgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagt 33323204  T
Q  271 atcctcctgttccaacttacacattgtgaagactcctaaaacaaagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccga 370  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33323203 atcctcctgttccaacttacacattgtgaagactgctaaaac-aagttcatttctagcttccacttttcttaaatagtctctcagccactttctcaccga 33323105  T
Q  371 ttgctgatt 379  Q
    || ||||||    
T  33323104 ttactgatt 33323096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33323464 - 33323427
Alignment:
Q  1 gatgtcctttgaaaacaagtaggtccatccacttccaa 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  33323464 gatgtcctttgaaaacaagtaggttcatccacttccaa 33323427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 23871 - 24113
Alignment:
Q  1 gatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttcttcaactaaatannnnnnncctgcaaattgcatctagtttcaaga 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||||||||  |        ||||||||||||||||||||| ||||    
T  23871 gatgtcctttgaaaacatgtaggtccatccacttccaaattcagactttggcttcttcaacta--tttttttttcctgcaaattgcatctagttttaaga 23968  T
Q  101 caactaaat-gtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatga 199  Q
    ||||||||| ||||||||| | || |    |||| ||||||||| ||| ||| |||||||||||||||||||||| |||||||||||| |||||||||||    
T  23969 caactaaattgtccatattaccgaga----taaaatctgtcaactttcatactttttgttttgcagcaaggcagttccaaatactgattagaaagaatga 24064  T
Q  200 atggtgtgatatgcatttattacgcaaaacagatgagaaatctaactga 248  Q
    || ||||| ||||| || |||||||||||| ||||||||||||||||||    
T  24065 atagtgtgttatgctttaattacgcaaaactgatgagaaatctaactga 24113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 75 - 248
Target Start/End: Original strand, 3379 - 3549
Alignment:
Q  75 cctgcaaattgcatctagtttcaagacaactaaat-gtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcag 173  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||| | || |    |||| ||||||||| ||| ||| |||||||||||||||||||||    
T  3379 cctgcaaattgcatctagttttaagacaactaaattgtccatattaccgaga----taaaatctgtcaactttcatactttttgttttgcagcaaggcag 3474  T
Q  174 tcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactga 248  Q
    | |||||||||||| ||||||||||||| ||||| ||||| || |||||||||||| ||||||||||||||||||    
T  3475 ttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaactgatgagaaatctaactga 3549  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 157 - 306
Target Start/End: Original strand, 16700352 - 16700496
Alignment:
Q  157 gttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaa 256  Q
    ||||||||||||| ||  |||||| | |||||||||||||| |    | || ||||||||||||| ||||||| |||||||| ||||||||| |||| ||    
T  16700352 gttttgcagcaagtcaaacccaaaaaatgataagaaagaataa----tatggtatgcatttattatgcaaaactgatgagaagtctaactgatattcgaa 16700447  T
Q  257 aacagattagtagtatcctcctgttccaacttacacattgtgaagactcc 306  Q
    |||| || ||| | ||||| ||||| ||||| ||||||||| ||||||||    
T  16700448 aacatatcagtcgcatcctgctgtttcaactgacacattgt-aagactcc 16700496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 12001938 - 12001799
Alignment:
Q  78 gcaaattgcatctagtttcaagacaactaaat-gtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcc 176  Q
    ||||||||||||||||||| || || | | || || |||||||||| |||| ||||| |||||||| | | || |||||   |||||||||||||||| |    
T  12001938 gcaaattgcatctagtttctagtcagccagattgttcatattgctggaaaccataaaatctgtcaaaccttcttcctttcagtttgcagcaaggcagttc 12001839  T
Q  177 caaatactgataagaaagaatgaatggtgtgatatgcattt 217  Q
    |||| |||||| | ||||||  ||| | |||||||||||||    
T  12001838 caaaaactgat-acaaagaaataatagagtgatatgcattt 12001799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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