View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_low_16 (Length: 376)
Name: NF4336_low_16
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_low_16 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 7123650 - 7124009
Alignment:
| Q |
1 |
cacatccaataccaaaaccaagtaacaaccttccaatgataagcatcgcaatgttctgggcgaatgaattgagtaaggcacccgacacaaagaataatcc |
100 |
Q |
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| T |
7123650 |
cacatccaataccaaaaccaagtaacaaccttccaatgataagcatcgcaatgttctgggcgaatgaattgagtaaggcacccgacacaaagaataatcc |
7123749 |
T |
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| Q |
101 |
acctaaaatcattgttgctcgcctacccatcattcttgttaagcttgatgccccaagactagatataagagcacttatataaatggaagatgtaaagaat |
200 |
Q |
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| T |
7123750 |
acctaaaatcattgttgctcgcctacccatcattcttgttaagcttgatgccccaagactagatataagagcacttatataaatggaagatgtaaagaat |
7123849 |
T |
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| Q |
201 |
gtcaatgtttgactgttgaatttgcaatattgatttgaagaagcttttgtatttatttgctgttcataaacagaaggaaagaattgttttaagaaggaat |
300 |
Q |
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| T |
7123850 |
gtcaatgtttgactgttgaatttgcaatattgatttgaagaagcttttgtatttatttgctgttcataaacagaaggaaagaattgttttaagaaggaat |
7123949 |
T |
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| Q |
301 |
ccatagatgttacaccaccagaaacaccgtgatcatatccataaattaatccaccacttg |
360 |
Q |
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| T |
7123950 |
ccatagatgttacaccaccagaaacaccgtgatcatatccataaattaatccaccacttg |
7124009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 187631 - 187949
Alignment:
| Q |
1 |
cacatccaataccaaaaccaagtaacaaccttccaatgataagcatcgcaatgttctgggcgaatgaattgagtaaggcacccgacacaaagaataatcc |
100 |
Q |
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|||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||| ||||||||| || |||||||||||||||| ||| |
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| T |
187631 |
cacacccaataccaaaaccaagcaacaaccttccagcgataagcatcgcaatgttcatggctaatccattgagtaatgcgcccgacacaaagaatattcc |
187730 |
T |
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| Q |
101 |
acctaaaatcattgttgctcgcctacccatcattcttgttaagcttgatgccccaagactagatataagagcacttatataaatggaagatgtaaagaat |
200 |
Q |
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| T |
187731 |
acccaaaatcatcgttgttcgcctacctaaagctcttgttatgcttgatgccccaagaccagcaacaagagcacttatataaagggaagatgtaaacaat |
187830 |
T |
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| Q |
201 |
gtcaatgtttgactgttgaatttgcaatattgatttgaagaagcttttgtatttatttgctgttcataaacagaaggaaagaattgttttaagaaggaat |
300 |
Q |
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| T |
187831 |
gtcagtatttgactgttgaatttgcaatattgatttgcagaaggtttcaaatttgattcctgttcataaacagatggaaaaaatcgtttcaagaaagaat |
187930 |
T |
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| Q |
301 |
ccatagatgttacaccacc |
319 |
Q |
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|||| |||||||| ||||| |
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| T |
187931 |
ccattgatgttactccacc |
187949 |
T |
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