View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_low_17 (Length: 375)
Name: NF4336_low_17
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 66 - 359
Target Start/End: Complemental strand, 19166879 - 19166568
Alignment:
| Q |
66 |
gtatcaaaccccgcatcctccacacgttgctgtattgataccaacgtttcctcgtgctaaccgttgccaccaaacctgaaccggcccaatctctgtcttc |
165 |
Q |
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| T |
19166879 |
gtatcaaaccccgcatcctccacacgttg---tattgataccaacgtttcctcgtgctaaccgttgccaccaaacctgaaccggcccaatctctgtcttc |
19166783 |
T |
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| Q |
166 |
ttcagcaaactggtactcaatcacccccttattaatcaaattgccctctgaaccagtcagtacaaagttctcaggttgttccaaatcctcatccaattcg |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19166782 |
ttcagcaaactggtactcaatcacccccttattaatcaaattgccctctgaaccagtcagtacaaagttctcaggttgttccaaatcctcatccaaatcg |
19166683 |
T |
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| Q |
266 |
acggattt---------------------aatagtaaggacgacgacttccttgttctttggaactgccatccctccggcaccctccttcaataactgtg |
344 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19166682 |
acggatttaataaccttcccgtcgtcagcaatagtaaggacgacgacttccttgttctttggaactgccatccctccggcaccctccttcaataaccgtg |
19166583 |
T |
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| Q |
345 |
tctgctgcccatcat |
359 |
Q |
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||||||||||||||| |
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| T |
19166582 |
tctgctgcccatcat |
19166568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 19166972 - 19166899
Alignment:
| Q |
13 |
aaaatcagcagcatcattaaatacttgtaaaacatcaccattatcacggcaacgtatcaaaccccgcatcctcc |
86 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19166972 |
aaaatcagcagcatcattaaaaacttgtaaaacatcaccattatcacggcaacgtatcaaaccccgcatcctcc |
19166899 |
T |
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