View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_low_18 (Length: 365)
Name: NF4336_low_18
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 11119367 - 11119678
Alignment:
| Q |
1 |
atcttctgaattggatcttgctagtgtggcctcagaatcaatggagggggatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgca |
100 |
Q |
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| T |
11119367 |
atcttctgaattggatcttgctagtgtgacctcagaatcaatggagggggatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgca |
11119466 |
T |
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| Q |
101 |
tgtggtgattggaattcactaataaagaaaagtgctagctaggcacatctgtgccttgatgtgtatgttatgtgctttatgtgtgcaagataa-ccnnnn |
199 |
Q |
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| T |
11119467 |
tgtggtgattggaattcactaataaagaaaagtgctagctaggcacatctgtgccttgatgtgtatgttatgtgctttatgtgtgcaagataatcttttt |
11119566 |
T |
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| Q |
200 |
nnnnnctaagtaattttc-----attatagtatatcctctctttccgtcacaagttatgtctgtgnnnnnnncaacattccccattattagataatcatc |
294 |
Q |
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| T |
11119567 |
tttttctaagtaattttcattatattatagtatatcctctctttccgtcacaagttatgtctttgtttttttcaacatttcccattattagatgatcatc |
11119666 |
T |
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| Q |
295 |
ctcttgcatcca |
306 |
Q |
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| T |
11119667 |
ctcttgcatcca |
11119678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 11111596 - 11111747
Alignment:
| Q |
1 |
atcttctgaattggatcttgctagtgtggcctc---agaatcaatggagggggatatggttagttcaatctaaatgaatgtgggttactttagttgaaat |
97 |
Q |
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|||||||||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11111596 |
atcttctgaattggatcttggcattgtggcctctgcagaatcaatggaaggggatatggttagttcaatctaaatgaatgtgggttactttagatgaa-- |
11111693 |
T |
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| Q |
98 |
gcatgtggtgattggaattcactaataaagaaaagtgctagctaggcacatctgtg |
153 |
Q |
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| T |
11111694 |
--atgtggtgattggaattcactaataaagagaagtgctggctaagcacatttgtg |
11111747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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