View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336_low_19 (Length: 363)

Name: NF4336_low_19
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336_low_19
NF4336_low_19
[»] chr8 (8 HSPs)
chr8 (15-348)||(7555963-7556294)
chr8 (72-348)||(43247459-43247733)
chr8 (60-348)||(24794650-24794936)
chr8 (61-254)||(22656985-22657179)
chr8 (154-343)||(6901962-6902149)
chr8 (107-209)||(11393399-11393501)
chr8 (60-113)||(43611348-43611401)
chr8 (206-348)||(11391260-11391400)
[»] chr2 (5 HSPs)
chr2 (72-348)||(9667930-9668204)
chr2 (72-208)||(11233551-11233687)
chr2 (152-253)||(28399567-28399668)
chr2 (23-59)||(15018191-15018227)
chr2 (204-255)||(11230651-11230702)
[»] chr1 (2 HSPs)
chr1 (72-348)||(39431228-39431502)
chr1 (72-243)||(20796602-20796773)
[»] chr5 (9 HSPs)
chr5 (60-343)||(30508952-30509233)
chr5 (60-343)||(30549295-30549576)
chr5 (72-343)||(35121617-35121886)
chr5 (60-348)||(19506928-19507214)
chr5 (106-233)||(38358444-38358571)
chr5 (17-57)||(30509639-30509679)
chr5 (17-57)||(30549979-30550019)
chr5 (23-57)||(35122298-35122332)
chr5 (147-243)||(31865312-31865408)
[»] chr7 (4 HSPs)
chr7 (60-342)||(43572471-43572751)
chr7 (152-253)||(18768425-18768526)
chr7 (152-253)||(8771866-8771967)
chr7 (23-57)||(17856250-17856284)
[»] chr6 (6 HSPs)
chr6 (72-348)||(13086485-13086759)
chr6 (152-239)||(21549868-21549955)
chr6 (60-190)||(11469497-11469627)
chr6 (294-348)||(18681498-18681552)
chr6 (23-57)||(33805294-33805328)
chr6 (23-59)||(5085616-5085652)
[»] chr3 (7 HSPs)
chr3 (72-348)||(10868586-10868860)
chr3 (73-348)||(21739418-21739685)
chr3 (60-348)||(14863380-14863666)
chr3 (71-254)||(24925701-24925884)
chr3 (133-343)||(30166252-30166460)
chr3 (152-239)||(42674469-42674556)
chr3 (127-233)||(36709906-36710012)
[»] chr4 (3 HSPs)
chr4 (60-348)||(42952455-42952741)
chr4 (133-343)||(7662237-7662445)
chr4 (23-57)||(19114950-19114984)
[»] scaffold0112 (1 HSPs)
scaffold0112 (60-254)||(14677-14871)
[»] scaffold0308 (1 HSPs)
scaffold0308 (23-57)||(17659-17693)


Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 348
Target Start/End: Original strand, 7555963 - 7556294
Alignment:
Q  15 catcacggatcctccctacctctcgccaccaagaagaacaacttcagatttaatgtgattcacaacagggtcctaaaacgaaagtctttgtggattaccc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  7555963 catcacggatcctccctacctctcgccaccaagaagaacaacttcagatttaatatgattcacaacagggtcctaaaacgaaagtctctgtggattaccc 7556062  T
Q  115 cgtataggtaaacctagatacataaaaagagtcttatccactttacaactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactccca 214  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  7556063 cgtataggtaaacctagatacataaaaggagtcttacccactttacaactcaacaccgaagccgcctcactcaaccacgagtcagaaatattaactccca 7556162  T
Q  215 ccaacaagcttttattaaagttcaccttctatcccgacatatcgcttcaaaaatgtcaagagtcgcccgaagagcatggacatttggccaacttttgtgg 314  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7556163 ccaacaagcttttattaaagttcaccttctatcccgac--atcgcctaaaaaatgtcaagagtcgcccgaagagcatggacatttggccaacttttgtgg 7556260  T
Q  315 ccaagcaacaaagtatcatcagcaaattgtaaat 348  Q
    ||||||||||||||||||||||||||||||||||    
T  7556261 ccaagcaacaaagtatcatcagcaaattgtaaat 7556294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 72 - 348
Target Start/End: Complemental strand, 43247733 - 43247459
Alignment:
Q  72 attcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccactttacaactcaacact 171  Q
    ||||||||||||||||  ||||||||| |   | |||||||||| |||||||||||| || ||||| ||| || ||||  ||||||||||||| |||||     
T  43247733 attcacaacagggtccctaaacgaaagacgacgcggattaccccctataggtaaaccaaggtacatgaaaggaatcttgcccactttacaacttaacacc 43247634  T
Q  172 gaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacatatcgcttcaaaaatgtc 271  Q
    |||||| ||| | |||||| |||  ||||||||||||| ||||| ||||||||||||||||| ||||||||| | ||||||||   |  ||||||||| |    
T  43247633 gaagccaccttattcaaccacgacacagaaatattaacacccactaacaagcttttattaaaattcaccttcaaccccgacatg--gactcaaaaatgac 43247536  T
Q  272 aagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatcatcagcaaattgtaaat 348  Q
    |||||| || ||||||||  | ||||| | ||||||||| |  || | ||||| |||||||||||||||||||||||    
T  43247535 aagagtggcacgaagagcccgaacattagcccaacttttcttacctaacaacagagtatcatcagcaaattgtaaat 43247459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 60 - 348
Target Start/End: Original strand, 24794650 - 24794936
Alignment:
Q  60 agatttaatgtgattcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccacttta 159  Q
    ||||||||| | |||||||||||||||| ||||||| |  |     ||||||||||  ||||| | ||| || ||||| ||| || ||||  ||||||||    
T  24794650 agatttaattttattcacaacagggtcccaaaacgacaaacgacacggattacccccaataggaagaccaaggtacatgaaaggaatcttgcccacttta 24794749  T
Q  160 caactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacatatcgc 259  Q
    ||| |||||| |||||||||||||  |||||  || |||||||||||||| ||||| ||||| ||||||||||| ||||||||| ||||||||  || |     
T  24794750 caattcaacattgaagccgcctcaaccaaccaagactcagaaatattaacacccactaacaaacttttattaaaattcaccttcaatcccgac--atggt 24794847  T
Q  260 ttcaaaaatgtcaagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatcatcagcaaattgtaaat 348  Q
     ||||||||| ||||||| || || ||||   | ||||| | ||| ||||| |  || | |||||||||||| ||||||||||||||||    
T  24794848 ctcaaaaatgacaagagtagcacggagagtccgaacattggcccagcttttcttacctaacaacaaagtatcgtcagcaaattgtaaat 24794936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 61 - 254
Target Start/End: Complemental strand, 22657179 - 22656985
Alignment:
Q  61 gatttaatgtgattcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttat-ccacttta 159  Q
    |||||||||  |||||| | ||||||| |||| || ||||| || |||||||| |  ||||| || ||| | ||||||||| || | || | ||||||||    
T  22657179 gatttaatgctattcacgatagggtcccaaaatgatagtctctgcggattaccaccaataggcaagcctgggtacataaaaggaatttttttccacttta 22657080  T
Q  160 caactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacat 254  Q
    ||||||||||| |  || |||||| ||||||  || ||||||||||||| |||||||||||||||||| ||||| ||||||||| | ||||||||    
T  22657079 caactcaacaccgccgctgcctcattcaaccaagaatcagaaatattaattcccaccaacaagcttttgttaaaattcaccttcaaacccgacat 22656985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 154 - 343
Target Start/End: Original strand, 6901962 - 6902149
Alignment:
Q  154 actttacaactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgaca 253  Q
    ||||| |||| |||||  |||||||| |||||||| | ||| ||||| ||||||| |||||||||||||||||| || ||||| |||||| | ||||||     
T  6901962 actttgcaacacaacatcgaagccgcatcactcaaacacgaatcagagatattaattcccaccaacaagcttttgttgaagtttaccttcaaacccgac- 6902060  T
Q  254 tatcgcttcaaaaatgtcaagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatcatcagcaaattg 343  Q
     || | ||||||||    ||| || || ||||||||  ||||||| | |||||||||||| || | |||||||||||| |||||||||||    
T  6902061 -attgattcaaaaagaagaagtgttgctcgaagagcccggacattagcccaacttttgtgacccaacaacaaagtatcgtcagcaaattg 6902149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 11393501 - 11393399
Alignment:
Q  107 gattaccccgtataggtaaacctagatacataaaaagagtcttatccactttacaactcaacactgaagccgcctcactcaaccgcgagtcagaaatatt 206  Q
    |||||||||  ||||| | ||| || ||||| ||| || ||||  ||||||||||||||||||||||||||||||||  |||||  || |||||||||||    
T  11393501 gattacccccaataggaagaccaaggtacatgaaaggaatcttgcccactttacaactcaacactgaagccgcctcaaccaaccaagactcagaaatatt 11393402  T
Q  207 aac 209  Q
    |||    
T  11393401 aac 11393399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 43611401 - 43611348
Alignment:
Q  60 agatttaatgtgattcacaacagggtcctaaaacgaaagtctttgtggattacc 113  Q
    |||||||||||||||||||| ||||||| ||||||| | |||||| ||||||||    
T  43611401 agatttaatgtgattcacaatagggtcccaaaacgatattctttgcggattacc 43611348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 348
Target Start/End: Complemental strand, 11391400 - 11391260
Alignment:
Q  206 taactcccaccaacaagcttttattaaagttcaccttctatcccgacatatcgcttcaaaaatgtcaagagtcgcccgaagagcatggacatttggccaa 305  Q
    |||| ||||| ||||| ||||||||||| ||||||||| ||||||||  || |  ||||||||| ||||||| || || ||||   | ||||| | ||||    
T  11391400 taacacccactaacaaacttttattaaaattcaccttcaatcccgac--atggtctcaaaaatgacaagagtagcacggagagtccgaacattggcccaa 11391303  T
Q  306 cttttgtggccaagcaacaaagtatcatcagcaaattgtaaat 348  Q
    ||||| |  || | |||||||||||| ||| ||||||||||||    
T  11391302 cttttcttacctaacaacaaagtatcgtcaacaaattgtaaat 11391260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 72 - 348
Target Start/End: Complemental strand, 9668204 - 9667930
Alignment:
Q  72 attcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccactttacaactcaacact 171  Q
    |||||||||||||||| |||||||||| |   | |||||||||| |||||||||||| |||||||| ||| || ||||  |||||||||| || |||||     
T  9668204 attcacaacagggtcccaaaacgaaagacgacgcggattaccccctataggtaaaccaagatacatgaaaggaatcttgcccactttacatcttaacacc 9668105  T
Q  172 gaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacatatcgcttcaaaaatgtc 271  Q
    |||||||||||| |||||| ||| |||||||||||||| ||||| ||||||||||||||||| || |||||| | ||||||  |  |  ||||||||| |    
T  9668104 gaagccgcctcattcaaccacgactcagaaatattaacacccactaacaagcttttattaaaattaaccttcaaccccgac--aaggactcaaaaatgac 9668007  T
Q  272 aagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatcatcagcaaattgtaaat 348  Q
    |||||| || || |||||| | ||||| | ||||||||| |  || | ||||| ||||||||||||||||| |||||    
T  9668006 aagagtggcacggagagcacgaacattagcccaacttttcttccctaacaacagagtatcatcagcaaattataaat 9667930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 72 - 208
Target Start/End: Complemental strand, 11233687 - 11233551
Alignment:
Q  72 attcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccactttacaactcaacact 171  Q
    |||||||||||||||| |||||||||| |   | ||||| |||| |||||||||||| | |||||| ||| || ||||   |||||||||||| |||||     
T  11233687 attcacaacagggtcccaaaacgaaagacgacgcggattgccccctataggtaaaccaaaatacatgaaaggaatcttgctcactttacaacttaacacc 11233588  T
Q  172 gaagccgcctcactcaaccgcgagtcagaaatattaa 208  Q
    |||||||||||| |||||| ||| ||| |||||||||    
T  11233587 gaagccgcctcattcaaccacgactcaaaaatattaa 11233551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 152 - 253
Target Start/End: Complemental strand, 28399668 - 28399567
Alignment:
Q  152 ccactttacaactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccga 251  Q
    ||||||||||||||||||  || || ||||||  ||||| ||| |||||||||||||  ||||||||||||||||||||||| ||||| ||| |||| ||    
T  28399668 ccactttacaactcaacatcgacgctgcctcaaacaaccacgaatcagaaatattaatacccaccaacaagcttttattaaaattcactttcaatccaga 28399569  T
Q  252 ca 253  Q
    ||    
T  28399568 ca 28399567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 15018191 - 15018227
Alignment:
Q  23 atcctccctacctctcgccaccaagaagaacaacttc 59  Q
    |||||||||||||| ||||||||||||||||||||||    
T  15018191 atcctccctacctcccgccaccaagaagaacaacttc 15018227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 11230702 - 11230651
Alignment:
Q  204 attaactcccaccaacaagcttttattaaagttcaccttctatcccgacata 255  Q
    |||||| ||||| ||||||||||||||||| ||||||||| | |||||||||    
T  11230702 attaacacccactaacaagcttttattaaaattcaccttcaaccccgacata 11230651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 72 - 348
Target Start/End: Original strand, 39431228 - 39431502
Alignment:
Q  72 attcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccactttacaactcaacact 171  Q
    |||||||||||||||| |||| ||||| |     |||||||||| |||||||||||| |||||||| ||| || ||||  ||||||||||||| |||||     
T  39431228 attcacaacagggtcccaaaatgaaagacgactcggattaccccctataggtaaaccaagatacatgaaaggaatcttgcccactttacaacttaacacc 39431327  T
Q  172 gaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacatatcgcttcaaaaatgtc 271  Q
    |||||||||||| |||||| ||| |||||||||||||| ||||| ||||||||||||||||| || |||||| | ||||||  |  |  ||||||||| |    
T  39431328 gaagccgcctcattcaaccacgactcagaaatattaacacccactaacaagcttttattaaaattaaccttcaaccccgac--aaggactcaaaaatgac 39431425  T
Q  272 aagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatcatcagcaaattgtaaat 348  Q
    |||||| || || |||||  | ||||| | ||||||||| |  || | ||||| |||||||||||||||||||||||    
T  39431426 aagagtggcacggagagctcgaacattagcccaacttttcttccctaacaacagagtatcatcagcaaattgtaaat 39431502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 72 - 243
Target Start/End: Original strand, 20796602 - 20796773
Alignment:
Q  72 attcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccactttacaactcaacact 171  Q
    |||||||||||||||| |||| ||||| |     |||||||||| |||||||||||| || ||||| ||| || ||||  ||||||||||||| |||||     
T  20796602 attcacaacagggtcccaaaatgaaagacgacacggattaccccctataggtaaaccaaggtacatgaaaggaatcttgcccactttacaacttaacacc 20796701  T
Q  172 gaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttc 243  Q
    |||||||||||| |||||| ||| |||||||||||||| ||||| |||||| |||||||||| || ||||||    
T  20796702 gaagccgcctcattcaaccacgactcagaaatattaacacccactaacaagtttttattaaaattaaccttc 20796773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 60 - 343
Target Start/End: Complemental strand, 30509233 - 30508952
Alignment:
Q  60 agatttaatgtgattcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccacttta 159  Q
    |||||||||  ||||||| ||||| ||| |||||||||||||  | ||||||||||  ||||| ||||||||||||| |||| || ||||| | ||||||    
T  30509233 agatttaatacgattcacgacaggatcccaaaacgaaagtctccgcggattacccccaataggcaaacctagatacaaaaaaggaatcttacctacttta 30509134  T
Q  160 caactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacatatcgc 259  Q
    || |||||||| ||||| |||||||||||||  || ||||| |||||||  |||| ||||||||||||||| || ||||| ||| | || |||  |||      
T  30509133 cagctcaacaccgaagcagcctcactcaaccaagaatcagagatattaatacccatcaacaagcttttattgaaattcactttcaaaccggac--atcaa 30509036  T
Q  260 ttcaaaaatgtcaagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatcatcagcaaattg 343  Q
     ||||||||| |||||||||| ||||||||  | ||||| | ||||||||| |||||||||| |||||| || || ||||||||    
T  30509035 ctcaaaaatggcaagagtcgcacgaagagcccgaacattagcccaacttttatggccaagcagcaaagtgtcgtccgcaaattg 30508952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 60 - 343
Target Start/End: Complemental strand, 30549576 - 30549295
Alignment:
Q  60 agatttaatgtgattcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccacttta 159  Q
    |||||||||  ||||||| ||||| ||| |||||||||||||  | ||||||||||  ||||| ||||||||||||| |||| || ||||| | ||||||    
T  30549576 agatttaatacgattcacgacaggatcccaaaacgaaagtctccgcggattacccccaataggcaaacctagatacaaaaaaggaatcttacctacttta 30549477  T
Q  160 caactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacatatcgc 259  Q
    || |||||||| ||||| |||||||||||||  || ||||| |||||||  |||| ||||||||||||||| || ||||| ||| | || |||  |||      
T  30549476 cagctcaacaccgaagcagcctcactcaaccaagaatcagagatattaatacccatcaacaagcttttattgaaattcactttcaaaccggac--atcaa 30549379  T
Q  260 ttcaaaaatgtcaagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatcatcagcaaattg 343  Q
     ||||||||| |||||||||| ||||||||  | ||||| | ||||||||| |||||||||| |||||| || || ||||||||    
T  30549378 ctcaaaaatggcaagagtcgcacgaagagcccgaacattagcccaacttttatggccaagcagcaaagtgtcgtccgcaaattg 30549295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 72 - 343
Target Start/End: Complemental strand, 35121886 - 35121617
Alignment:
Q  72 attcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccactttacaactcaacact 171  Q
    |||||||||||| ||| ||||| |||||||  | ||||||||||  ||||| |||| ||| |||| |||| ||  |||| ||||||||||||| ||||||    
T  35121886 attcacaacaggatcccaaaactaaagtctccgcggattacccccaataggcaaacataggtacaaaaaaggaaccttacccactttacaacttaacact 35121787  T
Q  172 gaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacatatcgcttcaaaaatgtc 271  Q
    || ||||||||||||||||  || ||| ||||||||| |||||||||||| ||||||||||| ||||| ||| |  | |||  |||   ||||| ||| |    
T  35121786 gaggccgcctcactcaaccaagaatcaaaaatattaattcccaccaacaaacttttattaaaattcactttcaaatctgac--atcaactcaaagatgac 35121689  T
Q  272 aagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatcatcagcaaattg 343  Q
    ||||||||||||||||| | | ||||| | ||| ||||| ||||| | || |||||| || |||||||||||    
T  35121688 aagagtcgcccgaagagaacgaacattagtccagcttttttggcctaacagcaaagtgtcgtcagcaaattg 35121617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 60 - 348
Target Start/End: Original strand, 19506928 - 19507214
Alignment:
Q  60 agatttaatgtgattcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccacttta 159  Q
    ||||||||| | |||||||||||||| | |||||||||  |   | ||||||||||  ||||| | ||| || ||||| ||| || ||||  ||||||||    
T  19506928 agatttaattttattcacaacagggttccaaaacgaaaaacgacgcggattacccccaataggaagaccaaggtacatgaaaggaatcttgcccacttta 19507027  T
Q  160 caactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacatatcgc 259  Q
    ||| |||| |||||||||||||||  |||||  || |||||||||||||| || || ||||| ||||||||||| ||||||||| ||||||||  || |     
T  19507028 caattcaatactgaagccgcctcaaccaaccaagactcagaaatattaacacctactaacaaacttttattaaaattcaccttcaatcccgac--atggt 19507125  T
Q  260 ttcaaaaatgtcaagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatcatcagcaaattgtaaat 348  Q
     ||||||||| ||||||| || || ||||   | ||||| | ||| ||||| |  || | |||||||||||| ||||||||||||||||    
T  19507126 ctcaaaaatgacaagagtagcacggagagtccgaacattggcccagcttttcttacctaacaacaaagtatcgtcagcaaattgtaaat 19507214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 38358444 - 38358571
Alignment:
Q  106 ggattaccccgtataggtaaacctagatacataaaaagagtcttatccactttacaactcaacactgaagccgcctcactcaaccgcgagtcagaaatat 205  Q
    |||||||| | |||||| | |||||| |||| |||| || | ||| ||||||||||||||||||| |  || ||||||  |||||  || ||||||||||    
T  38358444 ggattaccacctataggcagacctaggtacaaaaaaggaattttacccactttacaactcaacaccgccgctgcctcaaacaaccatgaatcagaaatat 38358543  T
Q  206 taactcccaccaacaagcttttattaaa 233  Q
    |||  |||||||||||||||||||||||    
T  38358544 taatacccaccaacaagcttttattaaa 38358571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 30509679 - 30509639
Alignment:
Q  17 tcacggatcctccctacctctcgccaccaagaagaacaact 57  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  30509679 tcacagatcctccctacctcccgccaccaagaagaacaact 30509639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 30550019 - 30549979
Alignment:
Q  17 tcacggatcctccctacctctcgccaccaagaagaacaact 57  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  30550019 tcacagatcctccctacctcccgccaccaagaagaacaact 30549979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 35122332 - 35122298
Alignment:
Q  23 atcctccctacctctcgccaccaagaagaacaact 57  Q
    |||||||||||||| ||||||||||||||||||||    
T  35122332 atcctccctacctcccgccaccaagaagaacaact 35122298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 31865312 - 31865408
Alignment:
Q  147 cttatccactttacaactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttc 243  Q
    |||| ||||||||||||||||||| || | ||||||    ||||  || |||| ||||||||| ||||| || || ||||| |||||||||||||||    
T  31865312 cttacccactttacaactcaacaccgacgtcgcctcgtctaaccaagaatcaggaatattaacccccacaaataaacttttgttaaagttcaccttc 31865408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 60 - 342
Target Start/End: Original strand, 43572471 - 43572751
Alignment:
Q  60 agatttaatgtgattcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccacttta 159  Q
    |||||||||  ||||||| ||| | ||| |||||||||||||  | ||||||||||  ||||| | ||||||||||| |||| || ||||| | ||||||    
T  43572471 agatttaatacgattcacgacatgatcccaaaacgaaagtctccgcggattacccccaataggcatacctagatacaaaaaaggaatcttacctacttta 43572570  T
Q  160 caactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacatatcgc 259  Q
    |||||||||||||| || |||||||||||||  || ||||| |||||||  |||||||||||||||||||| || ||||| ||| | || |||  |||      
T  43572571 caactcaacactgaggcagcctcactcaaccaagaatcagagatattaatacccaccaacaagcttttattgaaattcactttcaaaccggac--atcaa 43572668  T
Q  260 ttcaaaaatgtcaagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatcatcagcaaatt 342  Q
     ||||||||| |||||||||| ||||||||  | ||||| | ||||||||| ||| |||||| |||||| || ||| ||||||    
T  43572669 ctcaaaaatggcaagagtcgcacgaagagcccgaacattagcccaacttttatgggcaagcagcaaagtgtcgtcaacaaatt 43572751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 18768425 - 18768526
Alignment:
Q  152 ccactttacaactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccga 251  Q
    ||||||||||||||||||| || || ||||||  ||||| ||| |||||||||||||  ||||||||||||||||||||||| ||||| ||| |||| ||    
T  18768425 ccactttacaactcaacaccgacgctgcctcaaacaaccacgaatcagaaatattaatacccaccaacaagcttttattaaaattcactttcaatccaga 18768524  T
Q  252 ca 253  Q
    ||    
T  18768525 ca 18768526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 8771866 - 8771967
Alignment:
Q  152 ccactttacaactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccga 251  Q
    ||||||||||||||||||  || || ||||||  ||||| ||| |||||||||||||  ||||||||||||||||||||||| ||||| ||| |||| ||    
T  8771866 ccactttacaactcaacatcgacgctgcctcaaacaaccacgaatcagaaatattaatacccaccaacaagcttttattaaaattcactttcaatccaga 8771965  T
Q  252 ca 253  Q
    ||    
T  8771966 ca 8771967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 17856250 - 17856284
Alignment:
Q  23 atcctccctacctctcgccaccaagaagaacaact 57  Q
    |||||||||||||||||||||||||||||||||||    
T  17856250 atcctccctacctctcgccaccaagaagaacaact 17856284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 72 - 348
Target Start/End: Original strand, 13086485 - 13086759
Alignment:
Q  72 attcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccactttacaactcaacact 171  Q
    |||||||||||| ||| |||||||||| |   | |||||   || |||||||||||| || ||||| ||| || ||||  ||||||||||||| |||||     
T  13086485 attcacaacaggttcccaaaacgaaagacgacgcggattgtaccctataggtaaaccaaggtacatgaaaggaatcttgcccactttacaacttaacacc 13086584  T
Q  172 gaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacatatcgcttcaaaaatgtc 271  Q
    |||||||||||| |||||| ||| ||||||||||||||  |||| ||||||||||||||||| ||||||||| | |||||||||  |  ||||||||| |    
T  13086585 gaagccgcctcaatcaaccacgactcagaaatattaacatccactaacaagcttttattaaaattcaccttcaaccccgacata--gactcaaaaatgac 13086682  T
Q  272 aagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatcatcagcaaattgtaaat 348  Q
     ||||| || || |||||  | ||||| | ||| ||||| |  || | ||||| |||||||||||||||||||||||    
T  13086683 cagagtggcacggagagcccgaacattagcccagcttttcttacctaacaacagagtatcatcagcaaattgtaaat 13086759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 21549868 - 21549955
Alignment:
Q  152 ccactttacaactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcac 239  Q
    |||||||||||||||| |  || || ||||||  ||||| | | |||||||||||||  ||||||||||||||||||||||| |||||    
T  21549868 ccactttacaactcaaaatcgacgctgcctcaaacaaccacaaatcagaaatattaatacccaccaacaagcttttattaaaattcac 21549955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 190
Target Start/End: Original strand, 11469497 - 11469627
Alignment:
Q  60 agatttaatgtgattcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccacttta 159  Q
    |||||||||  |||||||||  |||||| ||||||||||||| || ||||| |||| || ||| ||||| |||||||  ||| ||  |||  ||||||||    
T  11469497 agatttaattcgattcacaatcgggtcccaaaacgaaagtctctgaggatttccccctacaggcaaaccaagatacaagaaaggaaccttccccacttta 11469596  T
Q  160 caactcaacactgaagccgcctcactcaacc 190  Q
    |||| ||||| ||  || ||||||| |||||    
T  11469597 caacccaacattgttgctgcctcacccaacc 11469627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 18681552 - 18681498
Alignment:
Q  294 acatttggccaacttttgtggccaagcaacaaagtatcatcagcaaattgtaaat 348  Q
    ||||||| |||||| |||| |||||  ||||||||||||||||| ||||||||||    
T  18681552 acatttgcccaactcttgttgccaattaacaaagtatcatcagcgaattgtaaat 18681498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 33805294 - 33805328
Alignment:
Q  23 atcctccctacctctcgccaccaagaagaacaact 57  Q
    |||||||||||||| ||||||||||||||||||||    
T  33805294 atcctccctacctcccgccaccaagaagaacaact 33805328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 5085652 - 5085616
Alignment:
Q  23 atcctccctacctctcgccaccaagaagaacaacttc 59  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  5085652 atcctccccacctcccgccaccaagaagaacaacttc 5085616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 72 - 348
Target Start/End: Original strand, 10868586 - 10868860
Alignment:
Q  72 attcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccactttacaactcaacact 171  Q
    ||||||||||| |||| |||| ||||| |   | |||||||||  ||||| |||||| || ||||| ||  || ||||  ||||||||||||| ||||||    
T  10868586 attcacaacagagtcccaaaatgaaagacggcgcggattaccctctatagataaaccaagttacatgaatggaatcttgcccactttacaacttaacact 10868685  T
Q  172 gaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacatatcgcttcaaaaatgtc 271  Q
    || |||||||||  ||||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||   |  ||||||||| |    
T  10868686 gatgccgcctcagccaaccacgactcagaaatattaacacccaccaacaagcttttattaaaattcaccttcaaccccgacatg--gactcaaaaatgac 10868783  T
Q  272 aagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatcatcagcaaattgtaaat 348  Q
    ||||||| | || |||||  | ||||||| ||| ||||| |  || | ||||| ||||||||||||| |||||||||    
T  10868784 aagagtcacacggagagcccgaacatttgcccagcttttcttacctaacaacagagtatcatcagcatattgtaaat 10868860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 348
Target Start/End: Complemental strand, 21739685 - 21739418
Alignment:
Q  73 ttcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccactttacaactcaacactg 172  Q
    ||||||||||||||| ||||||| || |   | |||||||||| |||||| | ||| || ||||| ||| || ||||  ||||||||     ||||||||    
T  21739685 ttcacaacagggtcccaaaacgacagacgacgcggattacccc-tataggaagaccaaggtacatgaaaggaatcttgcccacttta-----caacactg 21739592  T
Q  173 aagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacatatcgcttcaaaaatgtca 272  Q
    ||||||||||| ||||||  || |||||||||||||| ||||| ||||| ||||||||||| ||||||||| ||||||||  || |  ||||||||| ||    
T  21739591 aagccgcctcagtcaaccatgactcagaaatattaacacccactaacaaacttttattaaaattcaccttcaatcccgac--atggtctcaaaaatgaca 21739494  T
Q  273 agagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatcatcagcaaattgtaaat 348  Q
    ||||| || || ||||   | ||||||| ||||||||| |  || | ||||| |||||| ||||||||||||||||    
T  21739493 agagtagcacggagagtccgaacatttgcccaacttttcttacctaacaacatagtatcgtcagcaaattgtaaat 21739418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 60 - 348
Target Start/End: Complemental strand, 14863666 - 14863380
Alignment:
Q  60 agatttaatgtgattcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccacttta 159  Q
    ||||||||| | |||||||||||||||| ||||||| |  |   | ||||||||||  ||||| | ||| || ||||| ||| || ||||  ||||||||    
T  14863666 agatttaattttattcacaacagggtcccaaaacgacaaacgacgcggattacccccaataggaagaccaaggtacatgaaaggaatcttgcccacttta 14863567  T
Q  160 caactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacatatcgc 259  Q
    |||||||||||| |||||||||||  |||||  || || ||||||||||| || || ||||| ||||||||||| || |||||| | ||||||  || |     
T  14863566 caactcaacactaaagccgcctcaaccaaccaagactcggaaatattaacaccaactaacaaacttttattaaaattaaccttcaaacccgac--atggt 14863469  T
Q  260 ttcaaaaatgtcaagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatcatcagcaaattgtaaat 348  Q
     ||||||||| ||||||| || || ||||   | ||||| | ||| ||||| |  || | |||||||||||| ||||||||||||||||    
T  14863468 ctcaaaaatgacaagagtagcacggagagtccgaacattggcccagcttttcttacctaacaacaaagtatcgtcagcaaattgtaaat 14863380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 71 - 254
Target Start/End: Complemental strand, 24925884 - 24925701
Alignment:
Q  71 gattcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccactttacaactcaacac 170  Q
    ||||||||| ||| ||| |||| |||||||| |  ||||||||||  ||||| || ||||| |||| |||| || |  |  | ||||| || ||||||||    
T  24925884 gattcacaataggatcccaaaaggaaagtctctacggattacccccaataggcaagcctaggtacagaaaaggaattgttccaactttgcagctcaacac 24925785  T
Q  171 tgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacat 254  Q
     ||||| || ||| |||||| ||| | |||||||||||||||||||||||||||||||| |||||| |||||| | ||||||||    
T  24925784 cgaagctgcgtcattcaaccacgacttagaaatattaactcccaccaacaagcttttatgaaagtttaccttcaaacccgacat 24925701  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 343
Target Start/End: Complemental strand, 30166460 - 30166252
Alignment:
Q  133 tacataaaaagagtcttatccactttacaactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaa 232  Q
    ||||||||| ||  |||| |||||||||| |||||||||||||| |||||||  | ||  || ||||||||||||| |||||||||||| || |||||||    
T  30166460 tacataaaaggaaccttacccactttacagctcaacactgaagctgcctcacaaagccaagaatcagaaatattaattcccaccaacaaactcttattaa 30166361  T
Q  233 agttcaccttctatcccgacatatcgcttcaaaaatgtcaagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatca 332  Q
    | ||||| ||| | || ||||||  | ||| |||||   ||| || || |||||||   | ||||| | ||||||||||   ||||| ||||||||||||    
T  30166360 aattcactttcaacccagacata--gattcgaaaataagaagggtggcacgaagagttcgaacattcgcccaacttttgacaccaagtaacaaagtatca 30166263  T
Q  333 tcagcaaattg 343  Q
    || ||||||||    
T  30166262 tctgcaaattg 30166252  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 42674556 - 42674469
Alignment:
Q  152 ccactttacaactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcac 239  Q
    |||||||||||||||| ||  | || ||||||  ||||| ||| |||||||||||||  ||||||||||||||||||||||| |||||    
T  42674556 ccactttacaactcaaaaccaacgctgcctcaaacaaccacgaatcagaaatattaatacccaccaacaagcttttattaaaattcac 42674469  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 233
Target Start/End: Original strand, 36709906 - 36710012
Alignment:
Q  127 cctagatacataaaaagagtcttatccactttacaactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttt 226  Q
    ||||| ||||||||| || | || ||||||||||||||||||||||  || |||| |  |||||  || |||||||||||||  |||||||||| |||||    
T  36709906 cctaggtacataaaaggaattttttccactttacaactcaacactgtcgctgccttatacaaccaagaatcagaaatattaatacccaccaacaggcttt 36710005  T
Q  227 tattaaa 233  Q
    |||||||    
T  36710006 tattaaa 36710012  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 60 - 348
Target Start/End: Complemental strand, 42952741 - 42952455
Alignment:
Q  60 agatttaatgtgattcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccacttta 159  Q
    ||||||||| | |||||||| ||||||| ||||||| |  |   ||||||||||||  ||||| | ||| || ||||| ||| || ||||  || |||||    
T  42952741 agatttaattttattcacaaaagggtcccaaaacgacaaacgacgtggattacccctaataggaagaccaaggtacatgaaaggaatcttgcccccttta 42952642  T
Q  160 caactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacatatcgc 259  Q
    ||||||||||||||||||| ||||  |||||  || || ||||||||||| ||||| ||||| ||||||||||| ||||||||| ||||||||  || |     
T  42952641 caactcaacactgaagccgactcaaccaaccaagactctgaaatattaacacccactaacaaacttttattaaaattcaccttcaatcccgac--atggt 42952544  T
Q  260 ttcaaaaatgtcaagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatcatcagcaaattgtaaat 348  Q
     ||||||||| ||||||| || || ||||   | ||||| | ||||||||| |  || | ||||| |||||| ||||||||||||||||    
T  42952543 ctcaaaaatgacaagagtagcacggagagtccgaacattggcccaacttttcttacctaacaacagagtatcgtcagcaaattgtaaat 42952455  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 343
Target Start/End: Complemental strand, 7662445 - 7662237
Alignment:
Q  133 tacataaaaagagtcttatccactttacaactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaa 232  Q
    ||||||||| ||  |||| |||||||||| |||| ||||||||| |||||||  | ||  || |||||||||||||||||||||||||| || |||||||    
T  7662445 tacataaaaggaaccttacccactttacagctcagcactgaagctgcctcacaaagccaagaatcagaaatattaactcccaccaacaaactcttattaa 7662346  T
Q  233 agttcaccttctatcccgacatatcgcttcaaaaatgtcaagagtcgcccgaagagcatggacatttggccaacttttgtggccaagcaacaaagtatca 332  Q
    | ||||| ||| | || ||||||  | ||| |||||   ||| || || |||||||   | ||||| | ||||||||||   ||||| ||||||||||||    
T  7662345 aattcactttcaacccagacata--gattcgaaaataagaagggtggcacgaagagttcgaacattcgcccaacttttgacaccaagtaacaaagtatca 7662248  T
Q  333 tcagcaaattg 343  Q
    || ||||||||    
T  7662247 tctgcaaattg 7662237  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 19114950 - 19114984
Alignment:
Q  23 atcctccctacctctcgccaccaagaagaacaact 57  Q
    |||||||||||||| ||||||||||||||||||||    
T  19114950 atcctccctacctcccgccaccaagaagaacaact 19114984  T

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Target: scaffold0112 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 254
Target Start/End: Complemental strand, 14871 - 14677
Alignment:
Q  60 agatttaatgtgattcacaacagggtcctaaaacgaaagtctttgtggattaccccgtataggtaaacctagatacataaaaagagtcttatccacttta 159  Q
    |||||||||||||||||| | ||||||| ||||||| |||||  | |||||||| |  ||||| |  ||||  ||||||||| || | ||  |||| |||    
T  14871 agatttaatgtgattcacgatagggtcccaaaacgatagtctccgcggattaccaccaataggaaggcctaagtacataaaaggaatttttcccacctta 14772  T
Q  160 caactcaacactgaagccgcctcactcaaccgcgagtcagaaatattaactcccaccaacaagcttttattaaagttcaccttctatcccgacat 254  Q
    ||||||||||| |  || ||||||  || ||  || ||||||||||||| ||| || |||||||||||||  || || |||||| | ||||||||    
T  14771 caactcaacaccgccgctgcctcagccatccatgaatcagaaatattaattccaacaaacaagcttttatggaaatttaccttcaaacccgacat 14677  T

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Target: scaffold0308 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 17659 - 17693
Alignment:
Q  23 atcctccctacctctcgccaccaagaagaacaact 57  Q
    |||||||||||||| ||||||||||||||||||||    
T  17659 atcctccctacctcccgccaccaagaagaacaact 17693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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