View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4336_low_2 (Length: 731)

Name: NF4336_low_2
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4336_low_2
NF4336_low_2
[»] chr7 (7 HSPs)
chr7 (12-384)||(24486939-24487311)
chr7 (515-716)||(24487442-24487643)
chr7 (161-235)||(21813809-21813884)
chr7 (180-236)||(6530590-6530647)
chr7 (306-353)||(6530600-6530647)
chr7 (27-89)||(44338570-44338632)
chr7 (15-71)||(21813953-21814010)
[»] chr2 (6 HSPs)
chr2 (161-367)||(1173494-1173697)
chr2 (161-270)||(38584139-38584249)
chr2 (19-105)||(38583948-38584035)
chr2 (160-218)||(38584107-38584166)
chr2 (178-263)||(32290558-32290644)
chr2 (32-105)||(38583928-38584000)
[»] chr4 (4 HSPs)
chr4 (515-681)||(54147203-54147373)
chr4 (161-225)||(54147682-54147747)
chr4 (15-105)||(24225645-24225735)
chr4 (305-351)||(54147652-54147698)
[»] chr1 (5 HSPs)
chr1 (161-229)||(19825120-19825188)
chr1 (29-108)||(12177155-12177234)
chr1 (163-206)||(19825091-19825134)
chr1 (312-369)||(3775248-3775305)
chr1 (272-369)||(19825105-19825201)
[»] chr3 (1 HSPs)
chr3 (15-57)||(42530812-42530854)
[»] chr5 (4 HSPs)
chr5 (160-220)||(9511813-9511874)
chr5 (161-235)||(9511767-9511842)
chr5 (15-57)||(24137186-24137228)
chr5 (86-127)||(9512064-9512105)
[»] chr8 (2 HSPs)
chr8 (27-89)||(20242247-20242309)
chr8 (27-89)||(20250851-20250913)
[»] scaffold0025 (1 HSPs)
scaffold0025 (305-362)||(154943-155000)
[»] chr6 (1 HSPs)
chr6 (211-240)||(10741483-10741512)


Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 12 - 384
Target Start/End: Original strand, 24486939 - 24487311
Alignment:
Q  12 atcatcaaaaggggtagaagtacaatcaatcagaagaatcaaaaggaagacaagtgcaatcaatcggtagaattaaaagtgagagaagtgcaatcaaaag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24486939 atcatcaaaaggggtagaagtacaatcaatcagaagaatcaaaaggaagacaagtgcaatcaatcggtagaattaaaagtgagagaagtgcaatcaaaag 24487038  T
Q  112 aatcaataggaggagaccaatagagggagggagaagcaactaaaatgttcaaattgtgagaacttaactcaccaaacaactaaattgtgaacacttactc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  24487039 aatcaataggaggagaccaatagagggagggagaagcaactaaaatgttcaaattgtgagaacttgactcaccaaacaaccaaattgtgaacacttactc 24487138  T
Q  212 accaaacaaacaaacaaattgtgaacactttactcactaaacaatcaaattgtgagtgcaaactcaccaatcaatcagattatgaacacttggctcacca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  24487139 accaaacaaacaaacaaattgtgaacactttactcactaaacaatcaaattgggagtgcaaactcaccaatcaatcagattatgagcacttggctcacca 24487238  T
Q  312 aacaaacaaattatgaacatttgactcaccaagcaaacaaacaaaccaattatgagcaatattttttactcat 384  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24487239 aataaacaaattatgaacatttgactcaccaagcaaacaaacaaaccaattgtgagcaatattttttactcat 24487311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 515 - 716
Target Start/End: Original strand, 24487442 - 24487643
Alignment:
Q  515 tcatagtctaacacaattttacagacaatgagaagactagatacaaatatcatgttgccacaacaatgaagcctactaactcctaacttctaagcaccaa 614  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24487442 tcatagtctaaaacaattttacagacaacgagaagactagatacaaatatcatgttgccacaacaaagaagcctactaactcctaacttctaagcaccaa 24487541  T
Q  615 tattatgctcacgtaccttcaccactagatattctatcggtctcccaatcaaaacaaaagcaacatgattgatattttatctctaatcatgttagacata 714  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24487542 tattatgctcacgtaccttcaccactagatattctatcggtctcccaatcaaaacaaaagcaacatgattgatattttatctctaatcatgttagacata 24487641  T
Q  715 tt 716  Q
    ||    
T  24487642 tt 24487643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 21813884 - 21813809
Alignment:
Q  161 caaattgtgagaacttaactcaccaaacaactaaattgtgaacactt-actcaccaaacaaacaaacaaattgtga 235  Q
    ||||||||||| |||  |||||||||||||| ||| ||||| ||||| |||||||||||||| |||| ||||||||    
T  21813884 caaattgtgagcactcgactcaccaaacaaccaaagtgtgagcacttgactcaccaaacaaataaaccaattgtga 21813809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 6530647 - 6530590
Alignment:
Q  180 tcaccaaacaactaaattgtgaacactt-actcaccaaacaaacaaacaaattgtgaa 236  Q
    |||||||||||| |||||||||||| || |||||||||||| |||||| |||||||||    
T  6530647 tcaccaaacaaccaaattgtgaacatttgactcaccaaacagacaaaccaattgtgaa 6530590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 6530647 - 6530600
Alignment:
Q  306 tcaccaaacaaacaaattatgaacatttgactcaccaagcaaacaaac 353  Q
    ||||||||||| |||||| ||||||||||||||||||| || ||||||    
T  6530647 tcaccaaacaaccaaattgtgaacatttgactcaccaaacagacaaac 6530600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 44338632 - 44338570
Alignment:
Q  27 agaagtacaatcaatcagaagaatcaaaaggaagacaagtgcaatcaatcggtagaattaaaa 89  Q
    |||||| ||||||||||||||| ||||| || ||| |||||||||||||| | ||||| ||||    
T  44338632 agaagtgcaatcaatcagaagagtcaaaggggagagaagtgcaatcaatcagaagaatcaaaa 44338570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 21814010 - 21813953
Alignment:
Q  15 atcaaaaggggtagaagtacaatcaatcagaagaatc-aaaaggaagacaagtgcaat 71  Q
    ||||||||||| |||| |||||| ||||||||||||| |||||| ||| |||||||||    
T  21814010 atcaaaagggggagaaatacaatgaatcagaagaatcaaaaagggagagaagtgcaat 21813953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 161 - 367
Target Start/End: Original strand, 1173494 - 1173697
Alignment:
Q  161 caaattgtgagaacttaactcaccaaacaactaaattgtgaacacttactcaccaaacaaacaaacaaattgtgaacactttactcactaaacaatcaaa 260  Q
    ||||||||||| |||  |||||||||||||| ||| ||||| | |||||||||||||||||||| ||   ||||| ||||  |||||| |||||| ||||    
T  1173494 caaattgtgagcactagactcaccaaacaaccaaagtgtgagcgcttactcaccaaacaaacaa-ca---tgtgagcactagactcaccaaacaaccaaa 1173589  T
Q  261 ttgtgagtgcaa-actcaccaatcaatcagattatgaacacttggctcaccaaacaaacaaattatgaacatttgactcaccaagcaaacaaacaaacca 359  Q
     | ||||| |   ||||||||| ||| || ||||||| |||| | | ||||||||||||||||||||| || ||||| |||||| |||||||||||||||    
T  1173590 atatgagtactcgactcaccaaacaaacaaattatgagcactcgacccaccaaacaaacaaattatgagcacttgacccaccaaacaaacaaacaaacca 1173689  T
Q  360 attatgag 367  Q
    ||| ||||    
T  1173690 attttgag 1173697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 38584139 - 38584249
Alignment:
Q  161 caaattgtgagaacttaactcaccaaacaactaaattgtgaacactt-actcaccaaacaaacaaacaaattgtgaacactttactcactaaacaatcaa 259  Q
    ||||||||||| |||||||||||||||| || ||||||||| ||||| ||||||||| ||||||| |||| ||||| ||||  |||||| |||||| |||    
T  38584139 caaattgtgagcacttaactcaccaaactaccaaattgtgagcacttgactcaccaaccaaacaaccaaaatgtgagcactcgactcaccaaacaagcaa 38584238  T
Q  260 attgtgagtgc 270  Q
    |||||||||||    
T  38584239 attgtgagtgc 38584249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 38583948 - 38584035
Alignment:
Q  19 aaaggggtagaagtacaatcaatcagaagaatcaaaaggaagacaagtgcaat-caatcggtagaattaaaagtgagagaagtgcaat 105  Q
    ||||||| |||||| ||||||||||||||||||||||||  || || |||||| ||||| | ||||| ||||| | ||||||||||||    
T  38583948 aaagggggagaagtgcaatcaatcagaagaatcaaaagggcgagaaatgcaatgcaatcagaagaatcaaaagggggagaagtgcaat 38584035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 38584107 - 38584166
Alignment:
Q  160 tcaaattgtgagaacttaactcaccaaacaactaaattgtgaacactt-actcaccaaac 218  Q
    |||||||||||| | ||||||||||||||||| ||||||||| ||||| |||||||||||    
T  38584107 tcaaattgtgagcatttaactcaccaaacaaccaaattgtgagcacttaactcaccaaac 38584166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 32290644 - 32290558
Alignment:
Q  178 actcaccaaacaactaaattgtgaacactt-actcaccaaacaaacaaacaaattgtgaacactttactcactaaacaatcaaattg 263  Q
    |||||||||||||| ||||||||| ||||| || ||||||| ||| || |||||||||| ||||| || ||| |||||| |||||||    
T  32290644 actcaccaaacaaccaaattgtgagcacttgacccaccaaaaaaataaccaaattgtgagcacttgacccaccaaacaaacaaattg 32290558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 38583928 - 38584000
Alignment:
Q  32 tacaatcaatcagaagaatcaaaaggaagacaagtgcaatcaatcggtagaattaaaagtgagagaagtgcaat 105  Q
    |||||||||||||||||||| |||||  || |||||||||||||| | ||||| ||||| | ||||| ||||||    
T  38583928 tacaatcaatcagaagaatc-aaagggggagaagtgcaatcaatcagaagaatcaaaagggcgagaaatgcaat 38584000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 515 - 681
Target Start/End: Complemental strand, 54147373 - 54147203
Alignment:
Q  515 tcatagtctaacacaattttacagacaatgagaagactagatacaaatatcatgttgccacaacaatgaagcctactaactcctaacttct-aagcacca 613  Q
    |||||| | |||||||||||  ||||| |||||||||||| ||| |||  ||||||  ||||||||||||||||||||||||| ||   || ||  ||||    
T  54147373 tcatagaccaacacaattttgtagacattgagaagactagttaccaatgccatgttatcacaacaatgaagcctactaactcccaagcactaaaaaacca 54147274  T
Q  614 atattatgctcacg-----taccttcaccactagatattctatcggtctcccaatcaaaacaaaagcaacatg 681  Q
    || ||||||| | |     ||||||||||| || | ||| |||||||||||||||||||||||||||||||||    
T  54147273 at-ttatgcttaggtacactaccttcaccattataaatt-tatcggtctcccaatcaaaacaaaagcaacatg 54147203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 54147747 - 54147682
Alignment:
Q  161 caaattgtgagaacttaactcaccaaacaactaaattgtgaaca-cttactcaccaaacaaacaaa 225  Q
    |||| ||||||||||  |||||||||||||||||| ||||| || || ||||||||||||||||||    
T  54147747 caaaatgtgagaactagactcaccaaacaactaaagtgtgagcacctgactcaccaaacaaacaaa 54147682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 24225735 - 24225645
Alignment:
Q  15 atcaaaaggggtagaagtacaatcaatcagaagaatcaaaaggaagacaagtgcaatcaatcggtagaattaaaagtgagagaagtgcaat 105  Q
    ||||||||||| |||| | |||||||||||||||||||||||    | ||||||||| |||| | ||||| ||||  | ||||||||||||    
T  24225735 atcaaaagggggagaaatgcaatcaatcagaagaatcaaaagaggaaaaagtgcaatgaatcagaagaatcaaaaaggggagaagtgcaat 24225645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 54147698 - 54147652
Alignment:
Q  305 ctcaccaaacaaacaaattatgaacatttgactcaccaagcaaacaa 351  Q
    ||||||||||||||||||||||| || ||||| |||||| |||||||    
T  54147698 ctcaccaaacaaacaaattatgagcacttgacccaccaaacaaacaa 54147652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 19825120 - 19825188
Alignment:
Q  161 caaattgtgagaacttaactcaccaaacaactaaattgtgaacacttactcaccaaacaaacaaacaaa 229  Q
    ||||||||||| |||  |||| ||||||||| ||||||||| |||||||||||||| ||||||||||||    
T  19825120 caaattgtgagcactcgactcgccaaacaaccaaattgtgagcacttactcaccaaccaaacaaacaaa 19825188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 12177155 - 12177234
Alignment:
Q  29 aagtacaatcaatcagaagaatcaaaaggaagacaagtgcaatcaatcggtagaattaaaagtgagagaagtgcaatcaa 108  Q
    |||| |||||||||| ||||||||||||||| | |||||||||||||| | | ||| ||||| | |||||||| ||||||    
T  12177155 aagtgcaatcaatcataagaatcaaaaggaaaagaagtgcaatcaatcagaataatcaaaagggggagaagtgaaatcaa 12177234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 19825091 - 19825134
Alignment:
Q  163 aattgtgagaacttaactcaccaaacaactaaattgtgaacact 206  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||    
T  19825091 aattgtgagcacttaactcaccaaacaaccaaattgtgagcact 19825134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 3775248 - 3775305
Alignment:
Q  312 aacaaacaaattatgaacatttgactcaccaagcaaacaaacaaaccaattatgagca 369  Q
    ||||| |||||||||||||  ||||||||||| |||||||||| | ||||| ||||||    
T  3775248 aacaaccaaattatgaacacatgactcaccaaccaaacaaacacatcaattgtgagca 3775305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 369
Target Start/End: Original strand, 19825105 - 19825201
Alignment:
Q  272 aactcaccaatcaatcagattatgaacacttggctcaccaaacaaacaaattatgaacatttgactcaccaagcaaacaaacaaaccaattatgagca 369  Q
    |||||||||| ||| || ||| ||| |||| | ||| |||||||| |||||| ||| || || ||||||||| ||||||||||||| |||| ||||||    
T  19825105 aactcaccaaacaaccaaattgtgagcactcgactcgccaaacaaccaaattgtgagcactt-actcaccaaccaaacaaacaaacaaattgtgagca 19825201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 42530854 - 42530812
Alignment:
Q  15 atcaaaaggggtagaagtacaatcaatcagaagaatcaaaagg 57  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
T  42530854 atcaaaaggggaagaagtgcaatcaatcagaagaatcaaaagg 42530812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 9511874 - 9511813
Alignment:
Q  160 tcaaattgtgagaacttaactcaccaaacaactaaattgtgaacact-tactcaccaaacaa 220  Q
    |||||||||||| | ||||||||||||||||| ||||||||| ||||  |||||||||||||    
T  9511874 tcaaattgtgagtatttaactcaccaaacaaccaaattgtgagcactcgactcaccaaacaa 9511813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 9511842 - 9511767
Alignment:
Q  161 caaattgtgagaacttaactcaccaaacaactaaattgtgaacactt-actcaccaaacaaacaaacaaattgtga 235  Q
    ||||||||||| |||  ||||||||||||||  || ||||| ||||  ||||||||||||||||||| ||||||||    
T  9511842 caaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcaccaaacaaacaaacgaattgtga 9511767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 24137228 - 24137186
Alignment:
Q  15 atcaaaaggggtagaagtacaatcaatcagaagaatcaaaagg 57  Q
    ||||||||||| |||| |||||||||||||||||| |||||||    
T  24137228 atcaaaagggggagaaatacaatcaatcagaagaaccaaaagg 24137186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 9512105 - 9512064
Alignment:
Q  86 aaaagtgagagaagtgcaatcaaaagaatcaataggaggaga 127  Q
    ||||||| |||||||||||||||||||||||| ||| |||||    
T  9512105 aaaagtgggagaagtgcaatcaaaagaatcaaaagggggaga 9512064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 20242309 - 20242247
Alignment:
Q  27 agaagtacaatcaatcagaagaatcaaaaggaagacaagtgcaatcaatcggtagaattaaaa 89  Q
    |||||| ||||||||||||||| ||||| || ||| |||||||||||||| | ||||| ||||    
T  20242309 agaagtgcaatcaatcagaagagtcaaaggggagagaagtgcaatcaatcagaagaatcaaaa 20242247  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 20250851 - 20250913
Alignment:
Q  27 agaagtacaatcaatcagaagaatcaaaaggaagacaagtgcaatcaatcggtagaattaaaa 89  Q
    |||||| ||||||||||||||| ||||| || ||| |||||||||||||| | ||||| ||||    
T  20250851 agaagtgcaatcaatcagaagagtcaaaggggagagaagtgcaatcaatcagaagaatcaaaa 20250913  T

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Target: scaffold0025 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 305 - 362
Target Start/End: Original strand, 154943 - 155000
Alignment:
Q  305 ctcaccaaacaaacaaattatgaacatttgactcaccaagcaaacaaacaaaccaatt 362  Q
    |||||||||||| |||||| |||  |||||| | ||||| ||||||||||||||||||    
T  154943 ctcaccaaacaaccaaattgtgagaatttgatttaccaaccaaacaaacaaaccaatt 155000  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 240
Target Start/End: Complemental strand, 10741512 - 10741483
Alignment:
Q  211 caccaaacaaacaaacaaattgtgaacact 240  Q
    ||||||||||||||||||||||||||||||    
T  10741512 caccaaacaaacaaacaaattgtgaacact 10741483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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