View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_low_21 (Length: 340)
Name: NF4336_low_21
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 28813171 - 28813494
Alignment:
| Q |
1 |
ttcgcgcaagtacaccttgttgttcaagtagaaataaaacaattttttctatctgaaaatcaagagcaagcaaagaagtcttaaagtttattgtaatatc |
100 |
Q |
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| T |
28813171 |
ttcgcgcaagtacaccttgttgttcaagtagaaataaaacaattttttctatctgaaaatcaagagcaagcaaagaagtcttaaaatttattgtaatatc |
28813270 |
T |
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| Q |
101 |
aaaatgtaccgccaatctaaacatttcgttaagcgtattgacctgattgtctagcagcagtgaaaaatctcggagtacattatggtgattttgagctcca |
200 |
Q |
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| T |
28813271 |
aaaatgtaccgccaatctaaacatttcgttaagcgtattgacctgattgtctagcagcagtgaaaaatctcggagtacattatggtgattttgagctcca |
28813370 |
T |
|
| Q |
201 |
acctcaatttgttctgcatatctcttgactttctttttcataaacttatagttaatgtagtatctgtaaaaaattaaaacgtgttacctaaattaaacaa |
300 |
Q |
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| T |
28813371 |
acctcaatttgttctacatatctcttgactttctttttcataaacttatagttaatgtagtatctgtaaaaaattaaaacgtgttacctaaattaaacaa |
28813470 |
T |
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| Q |
301 |
aacatttctgagtttggtacaaga |
324 |
Q |
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||||||||||| |||||||||||| |
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| T |
28813471 |
aacatttctgactttggtacaaga |
28813494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 33419519 - 33419451
Alignment:
| Q |
6 |
gcaagtacaccttgttgttcaagtagaaataaaacaattttttctatctgaaaatcaagagcaagcaaag |
75 |
Q |
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|||||||| | |||||| ||||| | || ||||||||||||| |||||||||| |||||||||||||||| |
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| T |
33419519 |
gcaagtactctttgttgctcaagcaaaagtaaaacaattttt-ctatctgaaactcaagagcaagcaaag |
33419451 |
T |
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