View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_low_29 (Length: 287)
Name: NF4336_low_29
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 5040911 - 5040638
Alignment:
| Q |
1 |
aatagcacaaatgaaggaaatgatgtatagagcagcagcatttagaccagtgaattttggaatggatgatattgatgtaattgnnnnnnngcctaagagg |
100 |
Q |
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| T |
5040911 |
aatagcacaaatgaaggaaatgatgtatagagcagcagcatttagaccagtgaattttggaatggatgatattgatgtaattgaaaaaaagccgaagagg |
5040812 |
T |
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| Q |
101 |
aagaatgtaaagatatcaaatgatccacaaactgttgctgcaagacatagaagggaaagaataggtgaaagaattagggttttgcaaaagattgtacctg |
200 |
Q |
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| T |
5040811 |
aagaatgtaaagatatcaaatgatcctcaaactgttgctgcaaggcatagaagagaaagaataagtgaaagaattagggttttgcaaaagattgtacctg |
5040712 |
T |
|
| Q |
201 |
gtggaagcaaaatggacactgcttcaatgcttgatgaagctgcaaattatctcaagtttttaaggtcacaggtt |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040711 |
gtggaagcaaaatggacactgcttcaatgcttgatgaagctgcaaattatctcaagtttttaaggtcacaggtt |
5040638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 91 - 259
Target Start/End: Complemental strand, 43187144 - 43186976
Alignment:
| Q |
91 |
gcctaagaggaagaatgtaaagatatcaaatgatccacaaactgttgctgcaagacatagaagggaaagaataggtgaaagaattagggttttgcaaaag |
190 |
Q |
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|||||| ||||||||||| ||||||||||| |||||||||||||| || || || || ||||||||||||||| ||||||| ||||| || ||||| ||| |
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| T |
43187144 |
gcctaaaaggaagaatgttaagatatcaaaggatccacaaactgtggcggctaggcaaagaagggaaagaataagtgaaaggattagagtcttgcagaag |
43187045 |
T |
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| Q |
191 |
attgtacctggtggaagcaaaatggacactgcttcaatgcttgatgaagctgcaaattatctcaagttt |
259 |
Q |
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| T |
43187044 |
attgttcctggtggaaccaagatggacactgcatcaatgcttgatgaagctgctaattacctcaagttt |
43186976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43187225 - 43187181
Alignment:
| Q |
1 |
aatagcacaaatgaaggaaatgatgtatagagcagcagcatttag |
45 |
Q |
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| T |
43187225 |
aatagcacaaatgaaggaaatgatatatagagctgcagcatttag |
43187181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 6259553 - 6259698
Alignment:
| Q |
95 |
aagaggaagaatgtaaagatatcaaatgatccacaaactgttgctgcaagacatagaagggaaagaataggtgaaagaattagggttttgcaaaagatt- |
193 |
Q |
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||||| |||||||| ||||| ||||| |||||||||| ||| || |||||||||||||| |||||||| |||||||||| ||| | || | ||||||| |
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| T |
6259553 |
aagagaaagaatgtgaagatttcaaaggatccacaaagtgtagcagcaagacatagaagagaaagaattagtgaaagaataaggatattac-aaagatta |
6259651 |
T |
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| Q |
194 |
gtacctggtggaagcaaaatggacactgcttcaatgcttgatgaagc |
240 |
Q |
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||||||||||||| ||||||||||||||||| ||| | |||||||| |
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| T |
6259652 |
gtacctggtggaacaaaaatggacactgcttctatgttagatgaagc |
6259698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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