View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_low_30 (Length: 274)
Name: NF4336_low_30
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 1396369 - 1396224
Alignment:
| Q |
10 |
catcatcacttgggtcgtgcatcttcttgtcgaaacaaacagtgcacgaaatcacctcatcatctttcggatggctaacaaaaatattgtctagaaactg |
109 |
Q |
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| T |
1396369 |
catcaccacttgggtcgtgcatcttcttgtcgaaacaaacattgcacgaaatcacctcatcatctttcggatggcccacaaaaatattgtctagaaactg |
1396270 |
T |
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| Q |
110 |
agactgtaaactcatttcaactaattaggggcacgaaccattactg |
155 |
Q |
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| T |
1396269 |
agactgtaaactcatctcaactaattagggtcaggaaccattactg |
1396224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 1396209 - 1396152
Alignment:
| Q |
201 |
gaaagtgcattttccttcacaataaacttacttgggacacttcctatatcaataaatt |
258 |
Q |
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| T |
1396209 |
gaaagtgcattttccttcacaataaacttacttgggacacttcctatatcaagaaatt |
1396152 |
T |
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