View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_low_31 (Length: 258)
Name: NF4336_low_31
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 2777714 - 2777945
Alignment:
| Q |
9 |
acatcatcatttttatgttttgacacacacctctccaaatcaatttctctcgtgattttgttgtggtttgtatccctttctcacacgcaaattaagaact |
108 |
Q |
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| T |
2777714 |
acatcatcatttttatgttttgacacacatctctccaaatcaatttctctcgtgattttgttgtggtttgtatccctttctcacacgcaaattaagaact |
2777813 |
T |
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| Q |
109 |
agtatggcatatggtcattttaaattggctatgcgtaatcatattaatttgcatcttaaagaatccacattccacatgaaagctttgaaatgaaaatgag |
208 |
Q |
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| T |
2777814 |
agtatggcatatggtcattttaaattggctatgcgtaatcatattaatttgcatcttaaagaatccacattccacatgaaagctttgaaatgaaaatgag |
2777913 |
T |
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| Q |
209 |
agtaaatgcttcaagctttgtagcatgatcac |
240 |
Q |
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| T |
2777914 |
agtaaatgcttcaagctttgtagcatgatcac |
2777945 |
T |
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