View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4336_low_35 (Length: 248)
Name: NF4336_low_35
Description: NF4336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4336_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 32308396 - 32308591
Alignment:
| Q |
7 |
gagggtgtatttcgtttccacttctacattctcccaaaaaattctatagtttattgagagtatgagatgataaaaatttctactttttgagtagacatan |
106 |
Q |
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| T |
32308396 |
gagggtgtatttcgtttccacttctacattctcccaaaaaattctat---ttattaagagtatgagatgataaaaatttctactttttgagtagacatat |
32308492 |
T |
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| Q |
107 |
nnnnnncgtttaagaaagaacatgatgaaagaaaatgatgcttgttagaaaagtgataaaaaggatgaagatgttagattttatgggtttctttattttt |
206 |
Q |
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| T |
32308493 |
ttttttcgtttaagaaagaacatgatgaaa----atgatgcttgttagaaaagtgataaaaaggatgaagatgttagattttatgggtttctttattttt |
32308588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 32800632 - 32800541
Alignment:
| Q |
118 |
aagaaagaacatgatgaaagaaaatgatgcttgttaga-aaagtgataaaaaggatgaagatgtt---agattttatgggtttctttatttttaat |
209 |
Q |
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| T |
32800632 |
aagaaagaacatgatgaaa----atgatgcttgtcattcaaagtgatgaaaataatgaagatgttcatagattttatgggtttatttatttttaat |
32800541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 205
Target Start/End: Original strand, 31786010 - 31786210
Alignment:
| Q |
5 |
cagagggtgtatttcgtttccacttctacattctcccaaaaaattctatagtttattgagagtatgagatgataaaaatttctactttttgagtagaca- |
103 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31786010 |
cagaaggtgtatttcgtttccacttctacattctcccaaaaaattctatagtttattgagagtatgagatgataaaaatttctactttttgagtagacat |
31786109 |
T |
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| Q |
104 |
tannnnnnncgtttaagaaagaacatgatgaaagaaaatgatgcttgttagaaaagtgataaaaaggatgaagatgt---tagattttatgggtttcttt |
200 |
Q |
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| T |
31786110 |
ttttttttttgtttaagaaagaacaggat----gaaaatgatgcttgttaaaaaagtgataaaaatgatgaagttgttgatagattttatgggtttattt |
31786205 |
T |
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| Q |
201 |
atttt |
205 |
Q |
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||||| |
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| T |
31786206 |
atttt |
31786210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 40216055 - 40215998
Alignment:
| Q |
48 |
ttctatagtttattgagagtatgagatga-taaaaatttctactttttgagtagacat |
104 |
Q |
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| T |
40216055 |
ttctatagtttatggagagtatgagatgacgaaaaatttgtacttttttagtagacat |
40215998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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